Job Description P05793 Confidence 97.66% Date Thu Jan 5 10:58:54 GMT 2012 Rank 118 Aligned Residues 199 % Identity 21% Template c3f46A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		83	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure										.																							.																		.	.	.	.	.	.	.	.	.
Query SS confidence										.																							.																		.	.	.	.	.	.	.	.	.
Query Sequence		T	E	N	G	F	K	V	G	.	T	Y	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D	K	Q	H	S	.	D	V	V	R	T	V	Q	P	L	M	K	D	G	A	A	L	G	.	.	.	.	.	.	.	.	.	Y	S	H	G	F	N	I	V	E	V	G	E	Q	I	R	K	D	I	T	V	V	M
Query Conservation										.																							.																		.	.	.	.	.	.	.	.	.
Alig confidence										.																							.																		.	.	.	.	.	.	.	.	.									.		.	.	.	.
Template Conservation																																																																				.		.	.	.	.
Template Sequence		E	D	V	G	L	K	V	T	S	D	D	R	E	A	V	E	G	A	D	I	V	I	T	W	L	P	K	G	N	K	Q	P	D	I	I	K	K	F	A	D	A	I	P	E	G	A	I	V	T	H	A	A	T	I	P	T	T	K	F	A	K	I	F	K	D	L	.	G	.	.	.	.	R	E	D	L	N	I	T	S
Template Known Secondary structure		G	G	G	T					S							T	T		S								S	S	S								T	T	G	G	G	S		T	T							T	T	S												T	.	T	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																				.		.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.					.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	P	K	C	P	G	T	E	V	R	E	E	Y	K	R	G	F	G	V	P	T	L	I	A	V	H	P	E	N	D	P	K	G	E	G	M	A	I	A	K	A	W	A	A	A	T	G	G	H	R	A	G	V	L	E	S	S	F	V	A	E	V	K	S	D	L	M	G	E	Q	T	I	L	C	G	M	L	Q	A
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.											.	.	.																						.						.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.											.	.	.																						.						.	.	.	.
Template Sequence		Y	H	P	G	C	V	P	.	.	.	.	.	.	.	.	.	E	M	K	G	Q	V	Y	I	A	E	.	.	.	G	Y	A	S	E	E	A	V	N	K	L	Y	E	I	G	K	I	A	R	G	K	.	A	F	K	M	P	.	.	.	.	A	N	L	I	G	P	V	C	D	M	C	S	A	V	T	A	T	V	Y	A
Template Known Secondary structure			B		S	S		T	.	.	.	.	.	.	.	.	.	T	T									.	.	.	S	S	S																	S		.						.	.	.	.									S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.											.	.	.																						.						.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.										.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		232	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure														.																																													.	.	.							.	.
Query SS confidence														.																																													.	.	.							.	.
Query Sequence		G	S	L	L	C	F	D	K	L	V	E	E	.	G	T	D	P	A	Y	A	E	K	L	I	Q	F	G	W	E	T	I	T	E	A	L	K	Q	G	G	I	T	L	M	M	D	R	L	S	N	P	A	K	L	R	A	Y	A	.	.	.	L	S	E	Q	L	K	.	.	E	I	M	A	P	L	F	Q	K	H
Query Conservation														.																																													.	.	.							.	.
Alig confidence														.																																													.	.	.							.	.
Template Conservation
Template Sequence		G	L	L	A	Y	R	D	A	V	T	K	I	L	G	A	P	A	D	F	A	Q	M	M	A	D	E	A	L	T	Q	I	H	N	L	M	K	E	K	G	I	A	N	M	E	E	A	L	D	P	A	A	L	L	G	T	A	D	S	M	C	F	G	P	L	A	E	I	L	P	T	A	L	K	V	L	E	K	H
Template Known Secondary structure													T	S																											G	G	G	G	G	G	T	S		G	G	G	G	T	T	T	G	G	G	G		S	G	G	G	T	T												T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions