Job Description P05793 Confidence 98.96% Date Thu Jan 5 10:58:54 GMT 2012 Rank 18 Aligned Residues 247 % Identity 15% Template c3dzbA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus Resolution 2.46 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																												.																									.	.	.
Query SS confidence																												.																									.	.	.
Query Sequence		K	K	V	V	I	V	G	C	G	A	Q	G	L	N	Q	G	L	N	M	R	D	S	G	L	D	I	.	S	Y	A	L	R	K	E	A	I	A	E	K	R	A	S	W	R	K	A	T	E	N	G	F	.	.	.	K	V	G	T	Y	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D	K	Q	H	S	D
Query Conservation																												.																									.	.	.
Alig confidence																												.									.	.	.	.	.												.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		K	T	I	Y	I	A	G	L	G	L	I	G	G	S	L	A	L	G	I	K	R	D	H	P	D	Y	E	I	L	G	Y	N	R	S	D	.	.	.	.	.	Y	S	R	N	I	A	L	E	R	G	I	V	D	R	A	T	G	D	F	K	E	F	A	P	L	A	D	V	I	I	L	A	V	P	I	K	Q	T	X	A
Template Known Secondary structure							S			S												T	T		T	T	S							S			.	.	.	.	.									T		S		S				S						G	G	G		S						S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		V	V	R	T	V	Q	P	L	M	K	D	G	A	A	L	G	.	.	.	.	.	Y	S	H	G	F	N	I	V	E	V	G	E	Q	I	R	K	D	I	T	V	V	M	V	A	P	K	C	P	G	T	E	V	R	E	E	Y	K	R	G	F	G	V	P	T	L	I	A	V	H	P	E	N	D	P	K	G	E	G	M
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.																																					.	.	.											.	.
Template Conservation																																																											.	.	.											.	.
Template Sequence		Y	L	K	E	L	A	D	L	D	L	K	D	N	V	I	I	T	D	A	G	S	T	K	R	E	I	V	E	A	A	E	R	Y	L	T	G	K	N	V	Q	F	V	G	S	H	P	X	A	G	S	A	A	D	V	T	L	F	.	.	.	E	N	A	Y	Y	I	F	T	P	T	.	.	S	L	T	K	E	T	T	I
Template Known Secondary structure							T	T	S				T	T								S														T	T	S	S										B						T	T	T	T	.	.	.	T	T	S								.	.	T	T			T	T
Template Predicted Secondary structure																																																											.	.	.											.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	I	A	K	A	W	A	A	A	T	G	G	H	R	A	G	V	L	E	S	S	F	V	A	E	V	K	S	D	L	M	G	E	Q	T	I	L	C	G	M	L	Q	A	G	S	L	L	C	F	.	D	K	L	V	E	E	G	T	D	P	A	Y	A	E	K	L	I	Q	F	G	W	E	T	I	T	E	A	L	K	Q
Query Conservation																																																			.
Alig confidence														.	.	.							.	.	.	.	.	.																							.																												.	.	.
Template Conservation														.	.	.							.	.	.	.	.	.																																																			.	.	.
Template Sequence		P	E	L	K	D	I	L	S	G	L	K	S	.	.	.	R	Y	V	E	I	D	.	.	.	.	.	.	A	A	E	H	D	R	V	T	S	Q	I	S	H	F	P	H	L	L	A	S	G	L	X	E	Q	A	A	D	Y	A	Q	A	H	E	X	T	N	H	F	A	A	G	G	F	R	D	X	T	R	I	.	.	.
Template Known Secondary structure								G	G	G	G			.	.	.							.	.	.	.	.	.												T																						T															G	G	.	.	.
Template Predicted Secondary structure														.	.	.							.	.	.	.	.	.																																																			.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		G	G	I	T	L	M	M	D	R	L	S	N	P	A	K	L	R	A	Y	A	L	S	E	Q	.	.	.	.	.	L	K	E	I	M	A	P	L	F	Q	K	H	M	D	D	I	I	S	G	E	F	S	S
Query Conservation																										.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	E	S	E	P	G	X	W	A	S	I	L	X	T	N	G	P	A	V	L	D	R	I	E	D	F	K	K	R	L	D	H	V	A	D	L	I	K	A	E	D	E	S	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	S												T																								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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