 |
Job Description | P05793 | Confidence | 96.28% | Date | Thu Jan 5 10:58:54 GMT 2012 |
Rank | 171 | Aligned Residues | 80 |
% Identity | 15% | Template | c2q4eB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:probable oxidoreductase at4g09670; |
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
|
Resolution | 2.49 Å |
|
 |
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 90 | . | . | . | . | . | . | . | . | . | |
|
100 | . | . | . | . | . | . | . | . | . | 110 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . |  |  |
|
|  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | V | I | V | G | C | G | A | Q | G | L | N | Q | G | L | N | M | R | D | S | G | L | D | I | S | Y | A | L | R | K | E | A | I | A | E | K | R | A | S | W | R | K | A | T | E | N | G | F | . |
. |
. |
. |
. |
K | V | G | T | Y | E | E | L | I | P | Q | A | . |
. |
D | L | V | I | N | L | T | P | D | K | Q | H |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
| . | . | . | . | . |   |
|   |   |   |   |
|
|
|   |   |
| . | . |
|
|
|   |   |
|   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |
|
Template Sequence |   |
R | I | G | V | X | G | C | A | D | I | A | R | K | V | S | R | A | I | H | L | A | P | N | A | T | I | S | G | V | A | S | R | S | . |
. |
. |
L | E | K | A | K | A | F | A | T | A | N | N | Y | P | E | S | T | K | I | H | G | S | Y | E | S | L | L | E | D | P | E | I | D | A | L | Y | V | P | L | P | T | S | L | H |
Template Known Secondary structure |   |
 |  |  |  |
| S |
|
| T |  |  |  |  |  |  |  |  |  | T | T |
| S | S |  |  |  |  |  |  |
|
| S |
| . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T | S |  |  |
| S |
|  |  |  |  |  | T |
| T | T |
|
|  |  |  |  |
|
|
| G | G | G |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
112 | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | D | V | V | R | T | V | Q | P | L |
Query Conservation |   |
  |   |
|
|
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
V | E | W | A | I | K | A | A | E | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|