Job Description P05793 Confidence 98.28% Date Thu Jan 5 10:58:54 GMT 2012 Rank 44 Aligned Residues 217 % Identity 15% Template c2i76B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein tm1727 from thermotoga maritima Resolution 3.00 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		V	V	I	V	G	C	G	A	Q	G	L	N	Q	G	L	N	M	R	D	S	G	L	D	I	S	Y	A	L	R	K	E	A	I	A	E	K	R	A	S	W	R	K	A	T	E	N	G	F	K	V	G	.	T	Y	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D	K	Q	H	S	D	V	V	R	T	V
Query Conservation																																																					.
Alig confidence																								.	.	.	.	.	.	.	.			.	.	.	.	.															.
Template Conservation																								.	.	.	.	.	.	.	.			.	.	.	.	.
Template Sequence		L	N	F	V	G	T	G	T	L	T	R	F	F	L	E	C	L	K	I	G	Y	I	.	.	.	.	.	.	.	.	L	S	.	.	.	.	.	R	S	I	D	R	A	R	N	L	A	E	V	Y	G	G	K	A	A	T	L	E	K	H	P	E	V	V	F	V	I	V	P	D	R	Y	I	K	T	V	A	N	H	L
Template Known Secondary structure								S	T	T													B	.	.	.	.	.	.	.	.			.	.	.	.	.	S	S									T	T	T	T					T	T											S										T	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.			.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.									.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	L	M	K	D	G	A	A	L	G	Y	S	H	G	F	N	I	V	E	V	G	E	Q	I	R	K	D	I	T	V	V	M	V	A	P	K	C	P	G	T	E	V	R	E	E	Y	K	R	G	F	G	V	P	T	L	I	A	V	H	P	E	N	D	P	K	G	E	G	M	A	I	A	K	A	W	A	A	A	T
Query Conservation
Alig confidence				.	.	.											.	.																											.	.	.	.													.	.	.			.	.	.
Template Conservation				.	.	.											.	.																											.	.	.	.													.	.	.			.	.	.
Template Sequence		N	L	.	.	.	G	D	A	V	L	V	H	C	S	G	.	.	F	L	S	S	E	I	F	K	K	S	G	R	A	S	I	H	P	N	F	S	F	L	E	K	A	L	.	.	.	.	E	X	K	D	Q	I	V	F	G	L	E	G	.	.	.	D	E	.	.	.	R	G	L	P	I	V	K	K	I	A	E	E	I
Template Known Secondary structure				.	.	.	S	S								S	.	.	S	S		S	T	T	T		S	S	S								S				T	T	G	G	.	.	.	.	G		G	G	G								.	.	.		T	.	.	.	T
Template Predicted Secondary structure				.	.	.											.	.																											.	.	.	.													.	.	.			.	.	.
Template SS confidence
		77	.				.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.				.	.				.	130	.	.	.	.	.	.	.	.	.	140	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		G	G	H	R	A	G	V	L	E	S	S	F	V	A	E	V	K	S	D	L	M	G	E	Q	T	I	L	C	G	M	L	Q	A	G	S	L	L	C	F	D	K	L	V	E	E	G	T	D	P	A	Y	A	E	K	L	I	Q	F	G	W	.	E	T	I	T	E	A	L	K	Q	G	G	I	T	L	M	M	D	R	L
Query Conservation																																																														.
Alig confidence			.																	.	.	.	.	.	.																													.	.	.						.																	.	.	.
Template Conservation			.																	.	.	.	.	.	.																													.	.	.																							.	.	.
Template Sequence		S	.	G	K	Y	F	V	I	E	K	K	K	A	Y	H	L	A	A	.	.	.	.	.	.	V	I	A	S	N	F	P	V	A	L	A	Y	L	S	K	R	I	Y	T	L	L	G	L	D	E	P	E	L	.	.	.	L	I	H	T	L	X	K	G	V	A	D	N	I	K	K	X	R	V	E	C	S	L	.	.	.
Template Known Secondary structure		S	.	S																.	.	.	.	.	.					T																T	T		S					.	.	.																S							.	.	.
Template Predicted Secondary structure			.																	.	.	.	.	.	.																													.	.	.																							.	.	.
Template SS confidence
		144		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	P	A	K	L	R	A	Y	A	L	S	E	Q	L	K	E	I	M	A	P	L	F	Q	K	H	M	D	D	I	I
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	P	V	K	R	G	D	W	Q	V	.	.	.	.	.	.	.	.	.	.	.	V	E	E	E	R	R	E	Y	E
Template Known Secondary structure			S										.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.												.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions