Job Description P05793 Confidence 98.65% Date Thu Jan 5 10:58:54 GMT 2012 Rank 23 Aligned Residues 250 % Identity 16% Template c2g5cD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus Resolution 1.90 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																												.																									.	.	.	.
Query SS confidence																												.																									.	.	.	.
Query Sequence		K	K	V	V	I	V	G	C	G	A	Q	G	L	N	Q	G	L	N	M	R	D	S	G	L	D	I	.	S	Y	A	L	R	K	E	A	I	A	E	K	R	A	S	W	R	K	A	T	E	N	G	F	.	.	.	.	K	V	G	T	Y	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D	K	Q	H	S
Query Conservation																												.																									.	.	.	.
Alig confidence																												.									.	.	.	.	.												.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		Q	N	V	L	I	V	G	V	G	F	X	G	G	S	F	A	K	S	L	R	R	S	G	F	K	G	K	I	Y	G	Y	D	I	N	P	.	.	.	.	.	E	S	I	S	K	A	V	D	L	G	I	I	D	E	G	T	T	S	I	A	K	V	E	D	F	S	P	D	F	V	X	L	S	S	P	V	R	T	F	R
Template Known Secondary structure								S		S													T	T			S							S			.	.	.	.	.									T	T	S		S				S		G	G	G	G	G	G	G			S						S		G	G	G
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		D	V	V	R	T	V	Q	P	L	M	K	D	G	A	A	L	G	Y	S	H	G	F	.	.	.	.	N	I	V	E	V	G	E	Q	I	R	K	D	I	T	V	V	M	V	A	P	K	C	P	G	T	E	V	R	E	E	Y	K	R	G	F	G	V	P	T	L	I	A	V	H	P	E	N	D	P	K	G	E	G	M
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.																																													.	.
Template Conservation																																																																								.	.
Template Sequence		E	I	A	K	K	L	S	Y	I	L	S	E	D	A	T	V	T	D	Q	G	S	V	K	G	K	L	V	Y	D	L	E	N	I	L	G	K	R	F	V	G	G	H	P	I	A	G	T	E	K	S	G	V	E	Y	S	L	D	N	L	Y	E	G	K	K	V	I	L	T	P	T	.	.	K	K	T	D	K	K	R	L
Template Known Secondary structure											S		T	T								S			T											G	G	G											S			S	G	G	G			S	S	T	T	T	T									.	.	T	T	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	I	A	K	A	W	A	A	A	T	G	G	H	R	A	G	V	L	E	S	S	F	V	A	E	V	K	S	D	L	M	G	E	Q	T	I	L	C	G	M	L	Q	A	G	S	L	L	C	F	.	D	K	L	V	E	E	G	T	D	P	A	Y	A	E	K	L	I	Q	F	G	W	E	T	I	T	E	A	L	K	Q
Query Conservation																																																			.
Alig confidence														.	.	.										.	.	.	.	.	.																				.																												.	.	.
Template Conservation														.	.	.										.	.	.	.	.	.																																																.	.	.
Template Sequence		K	L	V	K	R	V	W	E	D	V	G	G	.	.	.	V	V	E	Y	X	S	P	E	L	.	.	.	.	.	.	H	D	Y	V	F	G	V	V	S	H	L	P	H	A	V	A	F	A	L	V	D	T	L	I	H	X	S	T	P	E	V	D	L	F	K	Y	P	G	G	G	F	K	D	F	T	R	I	.	.	.
Template Known Secondary structure											T	T		.	.	.										.	.	.	.	.	.									T																	T			S	S			G	G	G										T	G	G	.	.	.
Template Predicted Secondary structure														.	.	.										.	.	.	.	.	.																																																.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		G	G	I	T	L	M	M	D	R	L	S	N	P	A	K	L	R	A	Y	A	L	S	E	.	.	.	.	.	Q	L	K	E	I	M	A	P	L	F	Q	K	H	M	D	D	I	I	S	G	E	F	S	S
Query Conservation																									.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	K	S	D	P	I	X	W	R	D	I	F	L	E	N	K	E	N	V	X	K	A	I	E	G	F	E	K	S	L	N	H	L	K	E	L	I	V	R	E	A	E	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	S												T																								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions