Job Description P05793 Confidence 98.58% Date Thu Jan 5 10:58:54 GMT 2012 Rank 25 Aligned Residues 252 % Identity 12% Template c2f1kD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of synechocystis arogenate dehydrogenase Resolution 1.55 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		K	V	V	I	V	G	C	G	A	Q	G	L	N	Q	G	L	N	M	R	D	S	G	L	D	I	S	Y	A	L	R	K	E	A	I	A	E	K	R	A	S	W	R	K	A	T	E	N	G	F	.	.	K	V	G	T	Y	E	E	L	I	P	Q	A	D	L	V	I	N	L	T	P	D	K	Q	H	S	D	V	V	R
Query Conservation																																																			.	.
Alig confidence																																		.	.	.	.	.	.												.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		K	I	G	V	V	G	L	G	L	I	G	A	S	L	A	G	D	L	R	R	R	G	H	Y	L	I	G	V	S	R	Q	Q	.	.	.	.	.	.	S	T	C	E	K	A	V	E	R	Q	L	V	D	E	A	G	Q	D	L	S	L	L	Q	T	A	K	I	I	F	L	C	T	P	I	Q	L	I	L	P	T	L	E
Template Known Secondary structure									S													T	T								S			.	.	.	.	.	.									T	T	S		S				S		G	G	G	G	T	T		S						S		G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Q	P	L	M	K	D	G	A	A	L	G	Y	S	H	G	F	N	I	V	E	V	G	E	Q	I	R	K	D	I	T	V	V	M	V	A	P	K	C	P	G	T	E	V	R	E	E	Y	K	R	G	F	G	V	P	T	L	I	A	V	H	P	E	N	D	P	K	G	E	G	M	A	I	A	K	A	W	A	A
Query Conservation
Alig confidence																																																																	.
Template Conservation																																																																	.
Template Sequence		K	L	I	P	H	L	S	P	T	A	I	V	T	D	V	A	S	V	K	T	A	I	A	E	P	A	S	Q	L	W	S	G	F	I	G	G	H	P	A	G	T	A	A	Q	G	I	D	G	A	E	E	N	L	F	V	N	A	P	Y	V	L	T	P	.	T	E	Y	T	D	P	E	Q	L	A	L	R	S	V	L	E
Template Known Secondary structure				G	G	G	S		T	T								S			T	T	T									T	T										S			S	G	G	G			S	S	T	T	T	T								.		T	T													G
Template Predicted Secondary structure																																																																	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	G	H	R	A	G	V	L	E	S	S	F	V	A	E	V	K	S	D	L	M	G	E	Q	T	I	L	C	G	M	L	Q	A	G	S	L	L	C	F	D	K	L	V	E	E	G	T	D	P	A	Y	A	E	K	L	I	Q	F	G	W	E	T	I	T	E	A	L	K	Q	G	G	I	T	L	M	M	D	R
Query Conservation
Alig confidence						.	.	.										.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation						.	.	.										.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Sequence		P	L	G	V	.	.	.	K	I	Y	L	C	T	P	A	D	.	.	.	.	.	.	H	D	Q	A	V	A	W	I	S	H	L	P	V	M	V	S	A	A	L	I	Q	A	C	A	G	E	K	D	G	D	I	L	.	.	.	.	.	.	.	.	K	L	A	Q	N	L	A	S	S	G	F	R	D	T	S	R	V	G
Template Known Secondary structure		G	G	T		.	.	.										.	.	.	.	.	.									T																T		S						.	.	.	.	.	.	.	.																T	G	G
Template Predicted Secondary structure						.	.	.										.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160				.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		L	S	N	P	A	K	L	R	A	Y	A	L	S	.	.	.	.	.	E	Q	L	K	E	I	M	A	P	L	F	Q	K	H	M	D	D	I	I	S	G	E	F	S	S
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.
Template Conservation
Template Sequence		G	G	N	P	E	L	G	T	M	M	A	T	Y	N	Q	R	A	L	L	K	S	L	Q	D	Y	R	Q	H	L	D	Q	L	I	T	L	I	S	N	Q	Q	W	P	E
Template Known Secondary structure		G	S												T																								T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions