 |
Job Description | P05793 | Confidence | 97.88% | Date | Thu Jan 5 10:58:54 GMT 2012 |
Rank | 94 | Aligned Residues | 85 |
% Identity | 19% | Template | c1pgjA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; |
PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei
|
Resolution | 2.82 Å |
|
 |
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | 90 | . | . | . | . | . | . | |
|
|
. | . | . | 100 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . |
|  |  |
|
|  |  |  |  |  | . | . | . |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | V | I | V | G | C | G | A | Q | G | L | N | Q | G | L | N | M | R | D | S | G | L | D | I | S | Y | A | L | R | K | E | A | I | A | E | K | R | A | S | W | R | K | A | T | E | N | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
F | K | V | G | T | Y | E | E | L | I | . |
. |
. |
P | Q | A | D | L | V | I | N | L | T |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
| . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |   |
|
|
| . | . | . |   |   |
|
|
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|
|
|
|   |   | . | . | . | . | . | . |   |   |   |
|   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |   |
|   |
|
|
|
|   |
|
Template Sequence |   |
D | V | G | V | V | G | L | G | V | M | G | A | N | L | A | L | N | I | A | E | K | G | F | K | V | A | V | F | N | R | T | Y | . |
. |
. |
. |
. |
. |
S | K | S | E | E | F | M | K | A | N | A | S | A | P | F | A | G | N | L | K | A | F | E | T | M | E | A | F | A | A | S | L | K | K | P | R | K | A | L | I | L | V |
Template Known Secondary structure |   |
S |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S | S |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T | T | S | T | T | G | G | G |  |  |  |
| S |
|  |  |  |  |  |  |  | B |
| S | S |
|  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
107 | . | |
. | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | D | . |
K | Q | H | S | D | V | V | R | T | V | Q | P | L | M | K | D | G | A | A | L | G |
Query Conservation |   |
|
| . |
|   |
|   |   |
|
|
|   |
|   |
|   |
|
|   |
|   |   |
|   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
Template Sequence |   |
Q | A | G | A | A | T | D | S | T | I | E | Q | L | K | K | V | F | E | K | G | D | I | L | V |
Template Known Secondary structure |   |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|