Job Description P0A9H5 Confidence 68.24% Date Thu Jan 5 11:10:13 GMT 2012 Rank 227 Aligned Residues 133 % Identity 23% Template c2xzlA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex Resolution 2.40 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.
Predicted Secondary structure																																																	.																								.	.	.
Query SS confidence																																																	.																								.	.	.
Query Sequence		Q	R	V	K	E	K	V	D	A	R	V	A	Q	A	Q	D	E	R	G	I	I	I	V	F	T	G	N	G	K	G	K	T	T	A	A	F	G	T	A	T	R	A	V	G	H	G	K	.	K	V	G	V	V	Q	F	I	K	G	T	W	P	N	G	E	R	N	L	L	E	P	H	.	.	.	G	V	E	F	Q	V
Query Conservation																																																	.																								.	.	.
Alig confidence													.	.	.	.	.																																.								.	.	.	.													.	.	.
Template Conservation													.	.	.	.	.																																								.	.	.	.
Template Sequence		S	S	Q	S	N	A	V	S	H	V	L	.	.	.	.	.	Q	R	P	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	S	K	I	H	K	D	R	I	L	V	C	A	P	.	.	.	.	S	N	V	A	V	D	H	L	A	A	K	L	R	D	L	G	L	K	V	V	R
Template Known Secondary structure												T	.	.	.	.	.	T		S							S	T	T	S	S																									S	.	.	.	.	S														T	T
Template Predicted Secondary structure													.	.	.	.	.																																								.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.						.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460					.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		87	.	.	90	.	.	.	.	.	.	.																																	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	T	G	F	T	W	D	T	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	S	D	T	A	A	C	R	E	V	W	Q	H	A	K	R	M	L	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	A	K	S	R	E	D	V	E	S	S	V	S	N	L	A	L	H	N	L	V	G	R	G	A	K	G	E	L	K	N	L	L	K	L	K	D	E	V	G	E	L	S	A	S	D	T	K	R	F	V	K	L	V	R	K	T	E	A	E	I	L	N	K	A	D	V	V	C	C	T	C	V	G	A	G	D	K	R
Template Known Secondary structure					G	G	G	T	T	S			T	T	G	G	G	B							T	T			T													S																								T		S						T	T	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
				119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	S	L	D	M	V	L	L	D	E	L	T	Y	M	V	A	Y	D	Y	L	P	L	E	E	V	V	Q	A	L	N	E	R	P	H	Q	Q	T	V	I	I	T	G
Query Conservation		.	.
Alig confidence		.	.																	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		L	D	T	K	F	R	T	V	L	I	D	E	S	T	Q	A	S	E	.	.	.	.	.	.	.	.	P	E	C	L	I	P	I	V	K	G	A	K	Q	V	I	L	V	G
Template Known Secondary structure				S			S					T	T	G	G	G	S			.	.	.	.	.	.	.	.								T	T	T	B	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.									580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions