Job Description P0A805 Confidence 24.39% Date Thu Jan 5 11:06:33 GMT 2012 Rank 36 Aligned Residues 58 % Identity 24% Template c3onjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain Resolution 1.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.						.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.						.	.	.	.	.	.
Query Sequence		L	P	P	L	T	E	E	R	R	K	D	L	T	K	I	V	R	G	E	A	E	Q	A	R	V	.	.	.	.	.	.	.	A	V	R	N	V	.	.	.	.	.	.	R	R	D	A	N	D	K	V	K	A	L	L	K	D	K	E	I	S	E	D	D	D	R	R	S	Q	D	D	V	Q	K	L	T	D
Query Conservation																											.	.	.	.	.	.	.						.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.						.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		A	P	S	Q	P	L	S	Q	R	N	T	T	L	K	H	V	E	Q	Q	Q	D	E	L	F	D	L	L	D	Q	M	D	V	E	V	N	N	S	I	G	D	A	S	E	R	A	T	Y	K	A	K	L	R	E	W	K	K	.	.	.	.	.	.	T	I	Q	S	D	I	K	R	P	L	Q	S	L	V	D
Template Known Secondary structure		G	G	G	S																																																					.	.	.	.	.	.						T
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.							.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions