Job Description P77688 Confidence 99.46% Date Thu Jan 5 12:31:38 GMT 2012 Rank 4 Aligned Residues 101 % Identity 15% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	H	K	A	G	L	L	N	L	A	E	E	L	S	N	V	S	K	A	C	K	I	M	G	V	S	R	D	T	F	Y	R	Y	R	E	L	V	A	E	G	G	V	D	A	Q	I	N	R	S	R	R	A	P	N	L	K	N	R	T	D	E	A	T	E	Q	A	V	V	D	Y	A	V	A	F	P	T	H	G	Q
Query Conservation
Alig confidence																																												.	.											.
Template Conservation																																												.	.											.
Template Sequence		E	V	V	R	Q	R	I	V	D	L	A	H	Q	G	V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	.	.	S	I	R	P	G	V	I	G	G	S	.	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	Q	N	P	T	M	F	A
Template Known Secondary structure															T											T			S										S	S	T	T	S	.	.											.							T	T													S	S	S
Template Predicted Secondary structure																																												.	.											.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		H	R	A	S	N	E	L	R	K	Q	G	V	.	.	.	.	.	F	I	S	D	S	G	V	R	S	V	W	L
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		W	E	I	R	D	R	L	L	A	E	G	V	C	D	N	D	T	V	P	S	V	S	S	I	N	R	I	I	R
Template Known Secondary structure												T		S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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