Job Description P77688 Confidence 97.02% Date Thu Jan 5 12:31:38 GMT 2012 Rank 13 Aligned Residues 117 % Identity 13% Template c1iufA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:centromere abp1 protein; PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein Resolution UNK

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.											.	.	.	.	.	.													.	.	.
Query SS confidence																								.	.	.											.	.	.	.	.	.													.	.	.
Query Sequence		M	L	H	T	A	N	P	V	I	K	H	K	A	G	L	L	N	L	A	E	E	L	.	.	.	S	N	V	S	K	A	C	K	I	M	.	.	.	.	.	.	G	V	S	R	D	T	F	Y	R	Y	R	E	.	.	.	L	V	A	E	G	G	V	D	A	Q	I	N	R	S	R	R	A	P	N	L	K	N	R	T
Query Conservation																								.	.	.											.	.	.	.	.	.													.	.	.
Alig confidence																								.	.	.											.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		K	I	K	R	R	A	I	T	E	H	E	K	R	A	L	R	H	Y	F	F	Q	L	Q	N	R	S	G	Q	Q	D	L	I	E	W	F	R	E	K	F	G	K	D	I	S	Q	P	S	V	S	Q	I	L	S	S	K	Y	S	Y	L	D	N	T	V	E	K	P	W	D	V	K	R	N	R	P	P	K	Y	P	L	L
Template Known Secondary structure				S	S	S				S												S	S	S	S																S	S			S	S	S	S	T	T										T	T	T	S		S	S	S	S	S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.											.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	A	T	E	Q	A	V	V	D	Y	A	V	A	F	P	T	H	G	Q	H	R	A	S	N	E	L	R	K	.	.	.	.	.	.	.	.	.	.	Q	G	V	F	I	S	D	S	G	V	R	S	V	W	L	L	H	N	L	E
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	L	F	E	W	Q	V	Q	Q	G	D	D	A	T	L	S	G	E	T	I	K	R	A	A	A	I	L	W	H	K	I	P	E	Y	Q	D	Q	P	V	P	N	F	S	N	G	W	L	E	G	F	R	K	R	H	I	L	H
Template Known Secondary structure												T		T	T				S	S															S	S	S	S						S			S										T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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