Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEU0
Confidence94.92%DateThu Jan 5 11:24:14 GMT 2012
Rank60Aligned Residues193
% Identity16%Templated1us5a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.5

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60... ......70... ......80.........90.........100. ......
Predicted Secondary structure 


.....




.









............



Query SS confidence 

















. . . . .









.



























. . . . . . . . . . . .





Query Sequence  GELVGFDIDLAKELCKRI. . . . . NTQCTFVENP. LDALIPSLKAKKIDAIMSSLSITEKRQQ. . . . . . . . . . . . EIAFTD
Query Conservation 
   
   

   
    .....
         .                            ............      
Alig confidence 

















.....









.



























............





Template Conservation 
  

         
  
     

 
      
       
  
  
                               
Template Sequence  GSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRAL
Template Known Secondary structure 

TTSSTSS

S
TTS
ST
SSTTTTT


TT
Template Predicted Secondary structure 


































Template SS confidence 















































































   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   108.110.........120.........130.........140.........150.. .......160.........170.........180.
Predicted Secondary structure 


























......











Query SS confidence 












































. . . . . .




























Query Sequence  KLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHW. . . . . . APKGIEIVSYQGQDNIYSDLTAGRIDAAF
Query Conservation                                               ......                   
  
 

   
Alig confidence 












































......




























Template Conservation           

    
 
 
  

 

 
                    
        
          

  
 


  
Template Sequence  AALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALF
Template Known Secondary structure  TTSS
SSGGGGTTS


TT
TT

GGGSS


TTS
S
Template Predicted Secondary structure 







































Template SS confidence 















































































   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   182.......190.........200..... ....210.........220.... .....230...
Predicted Secondary structure 









...........................












.
Query SS confidence 























. . . . . . . . . . . . . . . . . . . . . . . . . . .


















.








Query Sequence  QDEVAASEGFLKQPVGKDYKFGGP. . . . . . . . . . . . . . . . . . . . . . . . . . . SVKDEKLFGVGTGMGLRKE. DNELREALN
Query Conservation                          ...........................                 
 .   
   

Alig confidence 























...........................


















.








Template Conservation                       
              
                                      
  
 
Template Sequence  YTVGLGASAIQQLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVTTPTVAVQAMLIASERLSEETVYKFM
Template Known Secondary structure 
TT
S




TTTTT
TT

TTSBTTB
S
TTS
Template Predicted Secondary structure 




























Template SS confidence 















































































   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   234....
Predicted Secondary structure 
Query SS confidence 




Query Sequence  KAFAE
Query Conservation    
  
Alig confidence 




Template Conservation   
   
Template Sequence  KAVFG
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 




   266...270
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions