Job Description P0AEU0 Confidence 59.38% Date Thu Jan 5 11:24:14 GMT 2012 Rank 81 Aligned Residues 173 % Identity 17% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

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		54	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																										.	.	100	.	.	.	.	.
Predicted Secondary structure										.											.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.											.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	E	L	C	K	.	R	I	N	T	Q	C	T	F	V	E	.	.	N	P	L	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	M	S	S	L	S	I	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	Q	Q	E	I	A	F
Query Conservation										.											.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.											.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P	K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F
Template Known Secondary structure													S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																				.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		T	D	K	L	Y	A	A	D	S	R	L	V	V	A	K	N	S	D	.	.	.	I	Q	P	T	V	E	S	L	K	G	K	R	V	G	V	L	Q	G	T	T	Q	E	T	F	G	N	E	H	W	A	P	K	.	.	.	.	.	.	.	.	G	I	E	I	V	S	Y	Q	G	Q	D	N	I	Y	S	D	L	T	A
Query Conservation																				.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N
Template Known Secondary structure					S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T	T	T	T		S	S	S	S													S							G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		G	R	I	D	A	A	F	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	V	G	K	D	Y	K	F	G	G	P	S	V	K	D	E	K	L	F	G	V	G	T	G	M	G	L	R	K	E	.	.	.	.	D	N	E	L	R	E	A	L	N	K
Query Conservation																																																				.	.	.	.
Alig confidence													.	.									.	.	.	.	.	.																								.	.	.	.
Template Conservation													.	.									.	.	.	.	.	.
Template Sequence		G	K	M	D	A	V	L	A	Y	S	T	.	.	D	G	R	I	K	A	Y	D	.	.	.	.	.	.	L	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E	L	E	G	V	I	N	K
Template Known Secondary structure		T	S		S						T	T	.	.		T					T	T	.	.	.	.	.	.					B		T	T			S				B													S	T	T							T
Template Predicted Secondary structure													.	.									.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions