Job Description P0AEU0 Confidence 99.79% Date Thu Jan 5 11:24:14 GMT 2012 Rank 36 Aligned Residues 222 % Identity 23% Template c3kg2A_ PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775 Resolution 3.60 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.								.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.														.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	Q	N	I	R	I	G	T	D	P	T	Y	A	P	F	E	S	K	N	S	Q	G	.	.	.	.	.	.	.	E	L	V	G	F	D	I	D	L	A	K	E	L	C	K	R	I	N	T	Q	C	T	F	V	E	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	L	I	P	S	L	K	A
Query Conservation																									.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.													.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		E	Q	K	T	V	V	V	T	T	I	.	L	E	S	P	Y	V	M	M	K	A	N	H	A	A	L	A	G	N	E	R	Y	E	G	Y	C	V	D	L	A	A	E	I	A	K	H	C	G	F	K	Y	K	L	T	I	V	G	D	G	K	Y	G	A	R	D	A	D	T	K	I	W	N	G	M	V	G	E	L	V	Y
Template Known Secondary structure												.			T	T	T	S				T	T	G	G	G			G	G	G	G			S														T									S	S						B		T	T	T			B									T
Template Predicted Secondary structure												.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	I	D	A	I	M	S	S	L	S	I	T	E	K	R	Q	Q	E	I	A	F	T	D	K	L	Y	A	A	D	S	R	L	V	V	A	K	N	S	D	I	Q	P	T	V	E	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	A	D	I	A	I	A	P	L	T	I	T	L	V	R	E	E	V	I	D	F	S	K	P	F	M	S	L	G	I	S	I	M	I	K	K	P	Q	K	S	K	P	G	V	F	S	F	L	D	P	L	A	Y	E	I	W	M	C	I	V	F	A	Y	I	G	V	S	V	V	L	F	L	V	S	T	N	E	F	G
Template Known Secondary structure		T	S		S				S			B							T	T					S		S																			G	G	G	T	T	T	T	S																	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
																																																																		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	R	V	G	V	L	Q	G	T	T	Q	E	T	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	N	S	L	W	F	S	L	G	A	F	M	Q	P	R	S	L	S	G	R	I	V	G	G	V	W	W	F	F	T	L	I	I	I	S	S	Y	T	A	N	L	A	A	F	L	T	V	E	R	M	V	S	P	I	E	S	A	E	D	L	S	K	Q	T	E	I	A	Y	G	T	L	D	S	G	S	T	K	E	F
Template Known Secondary structure									T	T	T	T	S																																													S	S								S	S					B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
		148	.	150											.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		G	N	E	.	.	.	.	.	.	.	.	.	.	H	W	A	P	K	G	I	E	I	V	S	Y	Q	G	Q	D	N	I	Y	S	D	L	T	A	G	R	I	D	.	A	A	F	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	V	G	K	D	Y	K	F	G	G	P	S	V	K	D	E	K	L	F	G	V	G
Query Conservation					.	.	.	.	.	.	.	.	.	.																													.
Alig confidence					.	.	.	.	.	.	.	.	.	.																													.																				.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		F	R	R	S	K	I	A	V	F	D	K	M	W	T	Y	M	R	S	A	E	P	S	V	F	V	R	T	T	A	E	G	V	A	R	V	R	K	S	K	G	K	Y	A	Y	L	L	E	S	T	M	N	E	Y	I	E	Q	R	K	P	C	D	.	.	.	.	.	.	.	T	M	K	V	G	G	N	L	D	S	K	G
Template Known Secondary structure																					S	S				B	S	S										T	T	T	T	S															T	S	T	T			.	.	.	.	.	.	.					S			S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.								720	.	.	.	.	.	.	.	.	.	730	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	M	G	L	R	K	E	D	N	E	L	R	E	A	L	N	K	A	F	A	E	M	R	A	D	G	T	Y	E	K	L	A	K	K	Y	F	D
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		Y	G	I	A	T	P	K	G	S	S	.	L	G	T	P	V	N	L	A	V	L	K	L	S	E	Q	G	L	L	D	K	L	K	N	K	W	W	Y
Template Known Secondary structure								T	T		S	.	S														T	T											T
Template Predicted Secondary structure												.
Template SS confidence
		732	.	.	.	.	.	.	.	740	.		.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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