Job Description P0AEU0 Confidence 87.38% Date Thu Jan 5 11:24:14 GMT 2012 Rank 68 Aligned Residues 197 % Identity 10% Template c3ho7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis Resolution 1.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		P	Q	N	I	R	I	G	T	D	P	T	Y	A	P	F	E	S	K	N	S	Q	G	E	L	V	G	F	D	I	D	L	A	K	E	L	C	K	R	I	.	N	T	Q	C	T	F	V	E	N	P	L	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	M	S	S	L	S	I	T	E	K	R	Q	Q	E	I
Query Conservation																																									.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	R	L	N	I	A	V	L	P	T	I	A	.	.	.	.	.	.	.	.	.	.	.	P	Y	L	L	P	R	V	F	P	I	W	K	K	E	L	A	G	L	E	I	H	V	S	E	M	Q	T	S	R	C	L	A	S	L	L	S	G	E	I	D	M	A	I	I	A	S	K	A	E	T	E	G	L	E	D	D
Template Known Secondary structure											T	T	T		.	.	.	.	.	.	.	.	.	.	.															S	T	T																				T	S		S					S	S					T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		A	F	T	D	K	L	Y	A	A	D	S	R	L	V	V	A	K	N	S	D	I	Q	P	T	V	E	S	L	K	G	K	R	V	G	V	L	Q	G	T	T	Q	.	.	.	.	.	E	T	F	G	N	E	H	W	A	P	K	G	I	E	I	V	S	Y	Q	G	Q	D	N	I	Y	S	D	L	T	A	G	R	I	D
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.
Template Conservation
Template Sequence		L	L	Y	Y	E	E	F	L	G	Y	V	S	R	C	E	P	L	F	E	Q	D	V	I	R	T	T	E	V	N	P	H	R	L	W	L	L	D	E	G	H	C	F	R	D	Q	L	V	R	F	C	Q	M	K	G	L	H	E	R	Q	T	A	Y	S	G	G	S	M	E	A	F	M	R	L	V	E	S	G	Q	G	I
Template Known Secondary structure														T	T	S	G	G	G	G	S	S	S	B		G	G	G			G	G	G	B				T	T	T	T	T	T	T	S	T	T					T		T	T	T	T		S	S	S				S												T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	F	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	V	G	K	D	Y	K	F	G	G	P	S	V	K	D	E	K	L	F	G	V	G	T	G	M	G	L	R	K	E	D	N	E	L	R	E	A	L	N	K	A	F	A	E	M	R	A
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																										.
Template Conservation																	.	.	.	.	.	.	.	.																										.
Template Sequence		T	F	I	P	Q	L	T	V	E	Q	L	S	P	S	Q	.	.	.	.	.	.	.	.	K	E	L	V	R	P	F	G	M	P	R	P	V	R	E	V	R	L	A	V	R	Q	D	Y	S	.	R	R	K	L	R	E	Q	L	I	G	L	L	R	S
Template Known Secondary structure						G	G	G	G	G	G	S					.	.	.	.	.	.	.	.		T	T				B		S	S												T	T		S	.														T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																										.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions