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Job DescriptionP0AEU0
Confidence98.29%DateThu Jan 5 11:24:14 GMT 2012
Rank39Aligned Residues214
% Identity18%Templatec2x26A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.. .......70... ......80.........90.........100
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Query Sequence  IPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKR. . INTQCTFVENP. LDALIPSLKAKKIDAIMSSLSITEKRQ
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Template Sequence  SPEALRIGYQKGSIGMVLAKSHQ. . . . . . . . . . . . LLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQ
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TT
TT............
TTS
SSTS
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S
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   25....30.........40....... ..50.........60.........70.........80.........90..
 
   101....... .110.........120.........130.........140.........150........ .160.........170..
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Query Sequence  QEIAFTDK. . . . LYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIE. . . . IVSYQGQDNIYSDL
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Template Sequence  AAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAF
Template Known Secondary structure  TT




GGGTT
S

SGGGGTTS
TTSTT

GGGS

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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   173......180.........190.........200.........210.........220.... ... ..230.........240.. .
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Query Sequence  TAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKE. . . . DNE. . . . LREALNKAFAEMRAD. G
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Template Sequence  QQGNVDAWAIWDPYYSAALLQGGVR. . . . . . . VLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQRE
Template Known Secondary structure  TTSSSTTSS.......STTS



TT
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   173......180.........190....... ..200.........210.........220.........230.........240.....
 
   244.....250......
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Query Sequence  TYEKLAKKYFDFD
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Template Sequence  QSIALLAKTMGLP
Template Known Secondary structure  T

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   246...250........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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