Job Description P0AEU0 Confidence 40.24% Date Thu Jan 5 11:24:14 GMT 2012 Rank 88 Aligned Residues 175 % Identity 12% Template c2vpnB_ PDB info PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata Resolution 1.55 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	E	L	C	K	R	I	N	T	Q	C	T	F	V	E	N	.	.	.	.	P	L	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	M	S	S	L	S	I	T	E	K	R	Q	Q	E	I	A	F	T	D	K	L	Y	A	A	D	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	G	E	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q	I	F	F	I	P	Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I
Template Known Secondary structure											S	S								T	T	S	S		S										T	T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T	T		S		S	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
																								116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	V	A	K	N	S	D	I	Q	P	T	V	E	S	L	K	G	K	R	V	G	V	L	Q	G	T	T	Q	E	T	F	G	N	E	H	W	A	P	K	G	I	E	I	V	S	Y	Q	G	Q	D	N	I	Y	S	D	L	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		N	E	M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	I	T	S	P	E	D	F	D	N	K	K	I	R	T	M	T	N	P	L	L	A	E	T	Y	K	A	F	G	A	T	P	.	.	.	.	.	T	P	L	P	W	G	E	V	Y	G	G	L	Q
Template Known Secondary structure			T								T	T	T																	S	S				S	G	G	G	G	T	T							S												T				.	.	.	.	.					G	G	G
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		A	G	R	I	D	A	A	F	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	V	G	K	D	Y	K	F	G	G	P	S	V	K	D	E	K	L	F	G	V	G	T	G	M	G	L	R	K	E	.	.	.	.	.	D	N	E	L	R	E	A	L	N	K	A	F	A	E	M	R	A
Query Conservation																																																					.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		T	G	I	I	D	G	Q	E	N	P	I	F	W	I	E	S	G	G	L	Y	E	V	S	P	N	L	T	F	.	.	.	.	.	.	.	.	T	S	H	G	W	F	T	T	A	M	M	A	N	Q	D	F	Y	E	G	L	S	E	E	D	Q	Q	L	V	Q	D	A	A	D	A	A	Y	D
Template Known Secondary structure			T	S		S												T	T	G	G	G	T							.	.	.	.	.	.	.	.																				S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions