Job Description P0AEU0 Confidence 89.20% Date Thu Jan 5 11:24:14 GMT 2012 Rank 66 Aligned Residues 177 % Identity 14% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.											.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	K	E	L	C	K	R	I	N	T	Q	C	T	F	V	E	N	P	L	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	M	S	S	L	S	I	T	E	K	R	Q	Q	E	I	A	F	T	D	K	L	Y	A	A	D	S	R	L	V	V	A	K	N	S	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L
Template Known Secondary structure											T	T														T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		124	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																	.	.	.	.								.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																	.	.	.	.								.	.	.	.
Query Sequence		I	Q	P	T	V	E	S	L	.	.	.	.	.	.	.	K	G	K	R	V	G	V	L	Q	G	T	T	Q	E	T	F	G	N	E	H	W	A	P	K	G	I	E	I	V	S	Y	Q	.	.	.	.	G	Q	D	N	I	Y	S	.	.	.	.	D	L	T	A	G	R	I	D	A	A	F	Q	D	E	V	A	A	S
Query Conservation										.	.	.	.	.	.	.																																	.	.	.	.								.	.	.	.
Alig confidence										.	.	.	.	.	.	.																																	.	.	.	.								.	.	.	.																		.
Template Conservation																																																																																	.
Template Sequence		G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	.
Template Known Secondary structure		T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T																			T	T	T	T										S	S	G	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		E	G	F	L	K	Q	P	V	G	K	D	Y	K	F	G	G	P	S	V	K	D	E	K	L	F	G	V	G	T	G	M	G	L	R	K	E	.	.	.	.	D	N	E	L	R	E	A	L	N	K
Query Conservation																																						.	.	.	.
Alig confidence		.	.	.																																		.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N
Template Known Secondary structure		.	.	.	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions