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Job DescriptionP0AEU0
Confidence100.00%DateThu Jan 5 11:24:14 GMT 2012
Rank12Aligned Residues223
% Identity20%Templatec2o1mB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60... ......70.........80.........90.........100..
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Query Sequence  IPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRI. NTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
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Template Sequence  KVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKRLPHYKFTFKTXEFSNLLVSLGQHKVDIVAHQXEKSKEREKK
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
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Query Sequence  IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQ
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Template Sequence  FLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGK. . RVITSAGALVLKKWNEDNGRPFEIAYEANETANQLKSGRADATIS
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   94.....100.........110.........120...... ...130.........140.........150.........160.........170.
 
   183......190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  DEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDF
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Template Sequence  TPFAVDFQNKTSTIKEKTVG. . . . . . . NVLSNAKVYFXFNKNEQTLSDDIDKALQEIIDDGTLKRLSLKWLGD
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   178.180.........190....... ..200.........210.........220.........230.........240...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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