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Job DescriptionP0AEU0
Confidence96.74%DateThu Jan 5 11:24:14 GMT 2012
Rank55Aligned Residues221
% Identity14%Templatec2i4cA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.... .....40.........50.........60...... ...70. ........80..... ....90.....
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Query Sequence  IPQNIRIGTDP. . TYAPFESKNSQGELVGFDIDLAKELCKRINTQ. CTFVE. NPLDALIPSLKAKK. . . . IDAIMSSLSI
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Template Sequence  ETANIKLGYIPIVEAAPLIIAQEKG. . . . . . . . . . . . FFAKYGMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQMPM
Template Known Secondary structure  S
S
SSGGGTT............TT
T
SS
TTTTS
S
TT
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   57..60.........70.........80. ........90.........100.........110.........120....
 
   96...100.........110....... ..120.........130.... .....140.........150.
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Query Sequence  TEKRQQEIAFTDKLYAADSRLV. . . . . . . . . . . . . . . . . . . . . . VAKNSDIQPTVESLKGK. . RVGVLQGTTQETFGNEH
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Template Sequence  PHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWIRY
Template Known Secondary structure  TTTTTTT





B


GGGTTTT
SS

GGGTSS

SSTTS
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   152 .......160.........170.........180.........190.........200.........210.........220.....
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Query Sequence  W. . . . . . APKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKED
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Template Sequence  WFAAGGVDPDTDIDLLAVPPAETVQGMRNGTMDAFSTGDPW. PYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKN
Template Known Secondary structure  TT

TTTTS

T


TT.TTS
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   205....210.........220.........230.........240..... ....250.........260.........270.........280...
 
   226...230.........240. ........250 .......
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Query Sequence  NELREALNKAFAEMRA. . . . . . . DGTYEKLAK. . KYFDFDV
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Template Sequence  PKATKALLKGIMEAQQWIDDPKNRPEVVQIVSGRNYFNVPT
Template Known Secondary structure  SGGGSTTTT
S
T
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   284.....290.........300.........310.........320....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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