Job Description P39305 Confidence 29.60% Date Thu Jan 5 11:59:09 GMT 2012 Rank 380 Aligned Residues 113 % Identity 12% Template d1pama4 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																								.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	L	E	R	L	Q	.	.	L	A	K	T	L	G	F	D	F	V	E	M	S	V	D	E	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	S	R	L	N	W	S	R	E	Q	R	L	A	L	V	N	A	I	V	E	T	G	V	R	V	P	S	M	C
Query Conservation								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	N	K	I	N	D	G	Y	L	T	G	M	G	I	T	A	I	W	I	S	Q	P	V	E	N	I	Y	S	V	I	N	Y	S	G	V	N	N	T	A	Y	H	G	Y	W	A	R	D	F	K	K	T	N	P	A	Y	G	T	M	Q	D	F	K	N	L	I	D	T	A	H	A	H	N	I	K	V	I	I	D	F
Template Known Secondary structure								T	T	T	T	G	G	G	T																				T	T						T	T	S		S									T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		76	.	.	.	80	.	.	.																																																								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	A	H	R	R	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	S	E	D	D	A	V	R	A	Q	G	L	E	I	M	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	N	H	T	S	P	A	S	S	D	D	P	S	F	A	E	N	G	R	L	Y	D	N	G	N	L	L	G	G	Y	T	N	D	T	Q	N	L	F	H	H	Y	G	G	T	D	F	S	T	I	E	N	G	I	Y	K	N	L	Y	D	L	A	D	L	N	H	N	N	S	S	V	D	V	Y	L	K	D	A	I	K
Template Known Secondary structure			T	T							S	S		T	T	S	T	T	T	T					T	T						S	T	T		T	T			B			S		B				S	S							S	B	S	T	T				B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	Q	F	A	Q	D	V	G	I	R	V	I	Q	L	A	G	Y	D	V	Y	Y	Q	E	A	N	N	E	T	R	R	R	F	R	D	G	L	K	E	S
Query Conservation
Alig confidence					.	.	.	.																	.	.	.	.
Template Conservation					.	.	.	.																	.	.	.	.
Template Sequence		M	W	L	.	.	.	.	D	L	G	V	D	G	I	R	V	D	A	V	K	H	M	P	.	.	.	.	F	G	W	Q	K	S	F	M	A	T	I	N	N	Y
Template Known Secondary structure					.	.	.	.		T	T							T	T	G	G	G	S		.	.	.	.
Template Predicted Secondary structure					.	.	.	.																	.	.	.	.
Template SS confidence
		217	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions