Return to main results Retrieve Phyre Job Id

Job DescriptionP39305
Confidence49.09%DateThu Jan 5 11:59:09 GMT 2012
Rank297Aligned Residues112
% Identity13%Templated1cxla4
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.81

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21..... ...30.........40..... ....50.........60.........70.....
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Query Sequence  WLERLQ. . LAKTLGFDFVEMSVDETDD. . . . . . . . . . . . . . . . . . . . . . . RLSRLNWSREQRLALVNAIVETGVRVPSMC
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Template Sequence  IINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDF
Template Known Secondary structure  TTTTGGGT








TT
STTS
S
TTT

TT
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   57..60.........70.........80.........90.........100.........110.........120.........130......
 
   76...80... ......90.........100
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Query Sequence  LSAHRRFP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGSEDDAVRAQGLEIMR
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Template Sequence  APNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIK
Template Known Secondary structure 
TT

TT
TTSTTTT
TT
STT
TT

B

S
B

SSSSBSTTB
TTS
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   137..140.........150.........160.........170.........180.........190.........200.........210......
 
   101........110.........120.........130.........140
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Query Sequence  KAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKE
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Template Sequence  MWL. . . . DLGIDGIRMDAVKHMP. . . . FGWQKSFMAAVNN
Template Known Secondary structure  ....TT

TTGGGS
....T
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   217.. 220.........230..... ....240........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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