Job Description P39305 Confidence 92.64% Date Thu Jan 5 11:59:09 GMT 2012 Rank 71 Aligned Residues 212 % Identity 18% Template c3ewbX_ PDB info PDB header:transferase Chain: X: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure															.	.													.	.	.
Query SS confidence															.	.													.	.	.
Query Sequence		P	L	G	I	Y	E	K	A	L	P	A	G	E	.	.	C	W	L	E	R	L	Q	L	A	K	T	L	.	.	.	G	F	D	F	V	E	M	S	V	D	E	T	D	D	R	L	S	R	L	N	W	S	R	E	Q	R	L	A	L	V	N	A	I	V	E	T	G	V	R	V	P	S	M	C	L	S	A	H	R	R
Query Conservation															.	.													.	.	.
Alig confidence															.	.													.	.	.									.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		K	I	Q	F	F	D	T	T	L	R	D	G	E	N	F	D	V	K	E	K	I	Q	I	A	L	Q	L	E	K	L	G	I	D	V	I	E	A	G	.	.	.	.	.	.	.	.	.	F	P	I	S	S	P	G	D	F	E	C	V	K	A	I	A	K	A	I	K	H	C	S	V	T	G	L	A	R	C	V	.	.
Template Known Secondary structure									T	T	T																					T		S						.	.	.	.	.	.	.	.	.		G	G	G																	S	S								S	S	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																																				.	.
Query SS confidence																																			.	.																																				.	.
Query Sequence		F	P	L	G	S	E	D	D	A	V	R	A	Q	G	L	E	I	M	R	K	A	I	Q	F	A	Q	D	V	G	I	R	V	I	.	.	Q	L	A	G	Y	D	V	Y	Y	Q	E	A	N	N	E	T	R	R	R	F	R	D	G	L	K	E	S	V	E	M	A	S	R	A	Q	.	.	V	T	L	A	M	E	I	M
Query Conservation																																			.	.																																				.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	D	I	D	R	A	E	E	A	L	K	D	A	V	S	P	Q	I	H	I	F	L	A	T	S	D	V	H	X	E	Y	K	L	K	X	S	R	A	E	V	L	A	S	I	K	H	H	I	S	Y	A	R	Q	K	F	D	V	V	Q	F	S	P	E	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T		S	S										S							T	T																				T	T		S								T	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.								.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	P	L	M	S	S	I	S	K	A	L	G	Y	A	H	Y	L	N	N	P	W	F	Q	L	Y	P	D	I	G	N	L	S	A	W	D	N	D	V	Q	M	E	L	Q	A	G	I	G	H	.	.	.	.	.	.	.	I	V	A	V	H	V	K	D	T	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.															.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		T	R	S	D	R	A	F	L	I	E	A	V	Q	T	A	I	D	A	G	A	T	V	I	N	I	P	D	T	V	G	Y	T	N	.	.	P	T	E	F	G	Q	L	F	Q	D	L	R	R	E	I	K	Q	F	D	D	I	I	F	A	S	H	C	H	D	D	L	G	X	A	T	A	N	A	L	A	A	I	E	N	G
Template Known Secondary structure		G	G	S															T	T									S	S	S				.	.																T	T	G	G	G	S							B		T	T	S												T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
							218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.
Predicted Secondary structure		.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	V	F	K	N	V	P	F	G	E	G	V	V	D	F	E	R	C	F	E	T	L	K	Q	S	.	.	.	.	.	.	.	.	G	Y	C
Query Conservation		.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	R	V	E	G	T	I	N	G	I	G	E	R	A	G	N	T	A	L	E	E	V	A	V	A	L	H	I	R	K	D	F	Y	Q	A	E	T	N	I	V
Template Known Secondary structure								B	G	G	G			T	T	T		B		B											T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions