Job Description P39305 Confidence 43.47% Date Thu Jan 5 11:59:09 GMT 2012 Rank 309 Aligned Residues 148 % Identity 12% Template c3bolB_ PDB info PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		C	W	L	E	R	L	Q	L	A	K	T	.	.	.	L	G	F	D	F	V	E	M	S	V	D	E	T	D	D	R	L	S	R	L	N	W	S	R	E	Q	R	L	A	L	V	N	A	I	V	E	T	G	V	R	V	P	S	M	C	L	S	A	H	R	R	F	P	L	G	S	E	D	D	A	V	R	A	Q	G	L
Query Conservation													.	.	.
Alig confidence													.	.	.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	E	I	V	I	K	E	A	K	T	Q	V	E	K	G	A	E	V	L	D	V	N	F	G	I	E	S	Q	I	.	.	.	.	.	.	D	V	R	Y	V	E	K	I	V	Q	T	L	P	Y	V	S	N	V	P	L	S	L	D	I	Q	.	.	.	.	.	.	.	.	.	.	N	V	D	L	T	E	R	A	L
Template Known Secondary structure																T	T		S							S	S	G	G	G	S	.	.	.	.	.	.																T		S								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.							.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.											.	.	.	.	.	.	.	400	.
																		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	M	R	K	A	I	Q	F	A	Q	D	V	G	I	R	V	I	Q	L	A	G	Y	D	V	Y	Y	Q	E	A	N	N	E	T	R	R	R	F	R	D	G	L	K	E	S	V	E	M	A	S	R	A	Q	V	.	.	T	L	A	M	E	I	M	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.																					.	.
Template Conservation																																															.	.	.	.	.
Template Sequence		R	A	Y	P	G	R	S	L	F	N	S	A	K	V	D	E	E	E	L	E	M	K	I	N	L	L	K	K	Y	G	G	T	L	I	V	L	L	M	G	K	D	V	P	K	S	.	.	.	.	.	F	E	E	R	K	E	Y	F	E	K	A	L	K	I	L	E	R	H	D	F	S	D	R	V	I	F	D	P	G	V
Template Known Secondary structure					S	S									S																							S		S	S	S				S	.	.	.	.	.																		T	T		T	T	S
Template Predicted Secondary structure																																															.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.						.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		159	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		Y	P	.	.	L	M	S	S	I	S	K	A	L	G	Y	A	H	Y	L	N	N	P	W	F	Q	L	Y	P	D	I	G	N
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		L	P	L	G	A	E	G	K	P	V	E	V	L	K	T	I	E	F	I	S	S	K	G	F	N	T	T	V	G	L	S	N
Template Known Secondary structure				G	G	G	T																T	T			B			B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions