Job Description P39305 Confidence 96.44% Date Thu Jan 5 11:59:09 GMT 2012 Rank 47 Aligned Residues 209 % Identity 16% Template c3bleA_ PDB info PDB header:transferase Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate Resolution 2.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		K	A	L	P	A	G	E	C	W	L	E	R	L	Q	L	A	K	T	L	.	.	.	.	G	F	D	F	V	E	M	S	V	D	E	T	D	D	R	L	S	R	L	N	W	S	R	E	Q	R	L	A	L	V	N	A	I	V	E	T	G	V	R	V	P	S	M	C	L	S	A	H	R	R	F	P	L	G	S	E	D
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.									.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		Q	T	R	G	V	S	F	S	T	S	E	K	L	N	I	A	K	F	L	L	Q	K	L	N	V	D	R	V	E	I	A	.	.	.	.	.	.	S	A	R	V	S	K	G	E	L	E	T	V	Q	K	I	M	E	W	A	A	T	E	Q	L	T	E	R	I	E	I	L	G	F	V	D	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	T	T																		T	T			S						.	.	.	.	.	.		T	T	S		T	T															T	T		G	G	G							S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.
Predicted Secondary structure																												.	.																																													.	.	.	.	.
Query SS confidence																												.	.																																													.	.	.	.	.
Query Sequence		D	A	V	R	A	Q	G	L	E	I	M	R	K	A	I	Q	F	A	Q	D	V	G	I	R	V	I	.	.	Q	L	A	G	Y	D	V	Y	Y	Q	E	A	N	N	E	T	R	R	R	F	R	D	G	L	K	E	S	V	E	M	A	S	R	A	Q	V	T	L	A	M	E	I	M	D	.	.	.	.	.	Y	P	L
Query Conservation																												.	.																																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																	.	.																																													.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	N	K	T	V	D	W	I	K	D	S	G	A	K	V	L	N	L	L	T	K	G	S	L	H	H	L	E	K	Q	L	G	K	T	P	K	E	F	F	T	D	V	S	F	V	I	E	Y	A	I	K	S	G	L	K	I	N	V	Y	L	E	D	W	S	N	G	F	R	N	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T										T											S								T																					T	T									T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																			.	.	220	.
Predicted Secondary structure																														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	S	I	S	K	A	L	G	Y	A	H	Y	L	N	N	P	W	F	Q	L	Y	P	D	I	G	N	L	.	.	S	A	W	D	N	D	V	Q	M	E	L	Q	A	G	I	G	H	I	V	A	V	H	V	K	D	T	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	F	K
Query Conservation																														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	Y	V	K	S	L	V	E	H	L	S	K	E	H	I	E	R	I	F	L	P	D	T	L	G	V	L	S	P	E	E	T	F	Q	G	V	D	S	L	I	Q	K	Y	P	D	I	H	F	E	F	H	G	H	N	D	Y	D	L	S	V	A	N	S	L	Q	A	I	R	A	G	V	K	G	L	H	A	S	I	N
Template Known Secondary structure														T	S			S							T	T																				T	T	S							B		T	T	S												T	T		S					B	G	G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		N	V	P	F	G	E	G	V	V	D	F	E	R	C	F	E	T	L	K	Q	.	S	G	Y	C
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		G	L	G	E	R	A	G	N	T	P	L	E	A	L	V	T	T	I	H	D	K	S	N	S	K
Template Known Secondary structure		G		S	S	T	T		B		B												S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions