Job Description P39305 Confidence 100.00% Date Thu Jan 5 11:59:09 GMT 2012 Rank 33 Aligned Residues 253 % Identity 14% Template c3aamA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Resolution 1.58 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	Y	E	K	A	L	P	A	G	E	C	W	L	E	R	L	Q	L	A	K	T	L	G	F	D	F	V	E	M	S	V	D	E	T	D	D	R	L	S	R	L	N	W	S	R	E	Q	R	L	A	L	V	N	A	I	V	E	T	G	V	R	V	P	S	M	C	L	S	A	H	R	R	F	P	L	G	S	E
Query Conservation
Alig confidence							.																																					.																														.	.	.
Template Conservation							.																																					.																														.	.	.
Template Sequence		Y	G	F	H	L	.	S	I	A	G	K	K	G	V	A	G	A	V	E	E	A	T	A	L	G	L	T	A	F	Q	I	F	A	K	S	P	R	S	W	R	P	R	.	A	L	S	P	A	E	V	E	A	F	R	A	L	R	E	A	S	G	G	L	P	A	V	I	H	A	S	Y	L	.	.	.	V	N	L	G	A
Template Known Secondary structure					B		.				S	T	T													T		S						S	S		T	T			S			.																	T	T										T	T	.	.	.			T	T
Template Predicted Secondary structure							.																																					.																														.	.	.
Template SS confidence
		4	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	A	V	R	A	Q	G	L	E	I	M	R	K	A	I	Q	F	A	Q	D	V	G	I	R	V	I	Q	L	A	G	Y	D	V	Y	Y	Q	E	A	N	N	E	T	R	R	R	F	R	D	G	L	K	E	S	V	E	M	A	S	R	A	Q	V	T	L	A	M	E	I	M	D	Y	P	L	M	S	S	I	S	K
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.
Template Sequence		E	G	E	L	W	E	K	S	V	A	S	L	A	D	D	L	E	K	A	A	L	L	G	V	E	Y	V	V	V	H	P	G	S	G	R	P	.	.	.	.	.	.	.	E	R	V	K	E	G	A	L	K	A	L	R	L	A	G	V	R	S	R	P	V	L	L	V	E	N	T	A	G	G	G	E	K	V	G	A	R
Template Known Secondary structure		S	S	T																				T										B	S			.	.	.	.	.	.	.															T			S	S	S											T	T	B	S			S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																														.	.	.	.										.	.	.	.	.														.	.	.	.
Query SS confidence																														.	.	.	.										.	.	.	.	.														.	.	.	.
Query Sequence		A	L	G	Y	A	H	Y	L	N	N	P	W	F	Q	L	Y	P	D	I	G	N	L	S	A	W	D	N	D	.	.	.	.	V	Q	M	E	L	Q	A	G	I	.	.	.	.	.	G	H	I	V	A	V	H	V	K	D	T	K	P	.	.	.	.	G	V	F	K	N	V	P	F	G	E	G	V	V	D	F	E	R
Query Conservation																														.	.	.	.										.	.	.	.	.														.	.	.	.
Alig confidence																														.	.	.	.										.	.	.	.	.														.	.	.	.															.
Template Conservation																																																																															.
Template Sequence		F	E	E	L	A	W	L	V	A	D	T	P	L	Q	V	C	L	D	T	C	H	A	Y	A	A	G	Y	D	V	A	E	D	P	L	G	V	L	D	A	L	D	R	A	V	G	L	E	R	V	P	V	V	H	L	N	D	S	V	G	G	L	G	S	R	V	D	H	H	A	H	L	L	Q	G	K	I	G	.	E	G
Template Known Secondary structure										T	T	S	S														T			T	T	T													T		G	G	G										S	S		T	T									T	T	S	S	S	S	T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230
		235	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		C	F	E	T	L	K	Q	S	G	Y	C	G	.	P	Y	L	I	E	M	W	S	E	T	A	E	D	P	A	A	E	V	A	K	A	R	D	W	V	K	A	R	M	A	K	A
Query Conservation														.
Alig confidence														.										.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		L	K	R	V	F	L	D	P	R	L	K	D	R	V	F	I	L	E	T	P	R	G	.	.	.	.	.	P	E	E	D	A	W	N	L	R	V	F	R	A	W	L	E	E	A
Template Known Secondary structure							T		G	G	G	T	T	S						S			S	.	.	.	.	.																T	T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions