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Job DescriptionP39305
Confidence56.69%DateThu Jan 5 11:59:09 GMT 2012
Rank272Aligned Residues114
% Identity26%Templatec1ea9D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:cyclomaltodextrinase; PDBTitle: cyclomaltodextrinase
Resolution3.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40..... ....50.........60.........70.........80..
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Query Sequence  WLERLQLAKTLGFDFVEMSVDETDD. . . . . . . . . . . RLSRLNWSREQRLALVNAIVETGVRVPSMCLSAHRRF. . . . . . .
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Template Sequence  VIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVD
Template Known Secondary structure  T
TTTTTTT







SSSTTS
S
TTT

TTT



SB

TTS
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   83......90.........100.........110.........120..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVY
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Template Sequence  VLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWI. . . RETGIDGWRLDVANEV
Template Known Secondary structure  TTT
GGGGGB
BSSSS


SSSS
SB
BSSS
TT
BBB
TTS...T

TTGGGS
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   254.....260.........270.........280.........290.........300.........310.... .....320.........330
 
   123......130.........140.
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Query Sequence  YQEANNETRRRFRDGLKES
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Template Sequence  S. . . . HQFWREFRRVVKQA
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   331 ........340.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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