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Job DescriptionP31119
Confidence100.00%DateThu Jan 5 11:47:06 GMT 2012
Rank31Aligned Residues330
% Identity13%Templatec3qovD_
PDB info PDB header:ligaseChain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380.........390.........400. ........410.........420.........430....
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Query Sequence  AQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIA. . . DFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAE
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Template Sequence  NYPFGLVAGDXKRDGVRIHSSNPTVIVHSQHDLDSWANLVARCLYXVGIRKTDVFQNSSGYGXFTGGLGFQYGAERLGCL
Template Known Secondary structure  TTTTTT

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   73......80.........90.........100.........110.........120.........130.........140.........150..
 
   435....440.........450.........460.........470...... ...480.........490.........500.........510
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Query Sequence  VFLYPSPLHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPY. . . . DFYRLRYVVAGAEKLQESTKQLWQDKFGLRILEG
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Template Sequence  TVPAAA. GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERXLNVKAYNS
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   158.160... ......170.........180.........190.........200.........210.........220.........230......
 
   511........520.........530.........540........ .550.........560.........570.........580.....
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Query Sequence  YGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVP. . . . . GIEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVR
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Template Sequence  FGXTEXNGPGVAFECQEQ. . NGXHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREXXPLIRYRT. . . . . . . . . . . .
Template Known Secondary structure  GGGT
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   237..240.........250.... .....260.........270.........280.........290.........300..
 
   586...590.........600.........610.........620.........630.........640.........650.........660.....
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Query Sequence  GEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNEL
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Template Sequence  . RDLTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKILVQFPELGSNYLITLETNQDEXIVEVELSDLST
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   303......310.........320.........330.........340.........350.........360.........370.........380.
 
   666 ...670.........680.........690.. .......700....
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Query Sequence  T. . . . RDKLQQYAREHGVPELAVPRDIRYLK. . QMPLLGSGKPDF
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Template Sequence  DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQS. EGKAVR
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   384.....390.........400.........410.........420. ......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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