Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 10 Aligned Residues 491 % Identity 20% Template c3gqwB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound Resolution 3.00 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																		.	.																						.
Query SS confidence																																		.	.																						.
Query Sequence		M	A	V	R	P	R	E	T	L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	E	D	V	N	F	.	.	T	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K	.	Y	S	V	E	G	E	R	I	G	L	M	L	P	N	A	G	I	S	A	A	V	I	F	G
Query Conservation																																		.	.																						.
Alig confidence													.																					.	.																						.
Template Conservation													.
Template Sequence		X	R	Y	A	D	F	P	T	L	V	D	.	A	L	D	Y	A	A	L	S	S	A	G	X	N	F	Y	D	R	R	C	Q	L	E	D	Q	L	E	Y	Q	T	L	K	A	R	A	E	A	G	A	K	R	L	L	S	L	N	L	K	K	G	D	R	V	A	L	I	A	E	T	S	S	E	F	V	E	A	F	F	A
Template Known Secondary structure					S			S	S				.						T	T	S	S								T	T																									T	T	T			T	T									S	S
Template Predicted Secondary structure													.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	R	R	R	M	P	A	M	M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R	W	V	Y	L	E	D	L	K	A	D	V	T	T	A	D	K	V	W	I	F	A	H	L	L	M
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Q	Y	A	G	L	V	A	V	P	L	A	I	P	S	W	S	A	K	L	Q	G	L	L	A	S	C	Q	P	A	A	I	I	T	G	D	E	W	L	P	L	V	N	A	A	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	P	E	L	H	V	L	S	H	A	W	F	K	A	L	P	E
Template Known Secondary structure					T	T																									S						S	T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S	S											S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	.	I	A	D	F	T	T	N	D	R	F	M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L	L	T	G	A
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		A	D	V	A	L	Q	R	P	V	P	N	D	I	A	Y	L	Q	Y	T	S	G	S	T	R	F	P	R	G	V	I	I	T	H	R	E	V	X	A	N	L	R	A	I	S	H	D	G	I	K	L	R	P	G	D	R	C	V	S	W	L	P	F	Y	H	D	X	G	L	V	G	F	L	L	T	P	V	A	T	Q	L
Template Known Secondary structure			S								T	T	S						G	G	G			S	S	S																					T	T	S				T	T									T	T	S								T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		434	.	.	.	.	.	440	.	.				.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.						.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure											.	.	.																																.	.	.	.	.																															.	.
Query SS confidence											.	.	.																																.	.	.	.	.																															.	.
Query Sequence		E	V	F	L	Y	P	S	P	L	.	.	.	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	A	.	.	.	.	.	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	.	.
Query Conservation											.	.	.																																.	.	.	.	.																															.	.
Alig confidence											.	.	.																																.	.	.	.	.																															.	.
Template Conservation
Template Sequence		S	V	D	Y	L	R	T	Q	D	F	A	X	R	P	L	Q	W	L	K	L	I	S	K	N	R	G	T	V	S	V	A	P	P	F	G	Y	E	L	C	Q	R	R	V	N	E	K	D	L	A	E	L	D	L	S	C	W	R	V	A	G	I	G	A	E	P	I	S	A	E	Q	L	H	Q	F	A	E	C	F	R	Q
Template Known Secondary structure														S	T										T	T																	S							T	T				T	T								S	S																T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
						504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.																													.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		.	.	.	.	G	L	R	I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	P	M	A	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	G	I	.
Query Conservation		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		V	N	F	D	N	K	T	F	X	P	C	Y	G	L	A	E	N	A	L	A	V	S	F	S	D	E	A	S	G	V	V	V	N	E	V	D	R	D	I	L	E	Y	Q	G	K	A	V	A	P	G	A	E	T	R	A	V	S	T	F	V	N	C	G	K	A	L	P	E	H	G	I	E	I	R	N	E	A	G	X	P
Template Known Secondary structure		T	T			G	G	G								G	G	G	S	S		S					T	T																	S	B						S	S									B						T	T								T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
					551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	E	G	G	R	L	Q	L	K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A	E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E
Query Conservation		.	.	.
Alig confidence		.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	E	R	V	V	G	H	I	C	I	S	G	P	S	L	X	S	G	Y	F	G	D	Q	V	S	Q	D	E	I	A	.	.	.	.	.	.	.	.	.	.	.	A	T	G	W	L	D	T	G	D	L	G	Y	L	L	D	G	Y	L	Y	V	T	G	R	I	K	D	L	I	I	I	R	G	R	N	I	W	P	Q
Template Known Secondary structure				T	T	B								S	T	T					B	T	T										.	.	.	.	.	.	.	.	.	.	.			S												T	T								G	G	G					S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.												.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.		.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.			.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure																																							.																												.	.
Query SS confidence																																							.																												.	.
Query Sequence		M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A	L	V	L	F	T	T	D	N	E	.	L	T	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	D	I	R	Y	L	.	.	K	Q	M	P	L	L	G	S	G	K	P	D	F
Query Conservation																																							.																												.	.
Alig confidence																																							.																												.	.
Template Conservation
Template Sequence		D	I	E	Y	I	A	E	Q	E	P	E	I	H	S	G	D	A	I	A	F	V	T	A	Q	E	K	I	I	L	Q	I	Q	C	R	I	S	D	E	E	R	R	G	Q	L	I	H	A	L	A	A	R	I	Q	S	E	F	G	V	T	A	A	I	D	L	L	P	P	H	S	I	P	R	T	S	S	G	K	P	A	R
Template Known Secondary structure									T	S	S	S			T	T	S							T	T	S																																S										T	T	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		705	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	K	S	W	V	D	E	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	A	K	K	R	Y	Q	K	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.