Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 22 Aligned Residues 458 % Identity 21% Template c3g7sA_ PDB info PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus Resolution 2.15 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																						.
Query SS confidence																														.	.	.	.	.	.																						.
Query Sequence		P	R	E	T	L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	E	D	V	N	F	.	.	.	.	.	.	T	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K	.	Y	S	V	E	G	E	R	I	G	L	M	L	P	N	A	G	I	S	A	A	V	I	F	G
Query Conservation																														.	.	.	.	.	.																						.
Alig confidence																														.	.	.	.	.	.																						.
Template Conservation
Template Sequence		P	K	I	S	L	A	D	R	I	D	A	A	A	E	K	F	G	E	K	T	A	I	I	S	A	E	P	K	F	P	S	E	F	P	E	S	X	N	F	L	E	I	C	E	V	T	K	K	L	A	S	G	I	S	R	K	G	V	R	K	G	E	H	V	G	V	C	I	P	N	S	I	D	Y	V	X	T	I	Y	A
Template Known Secondary structure						T	T											T	T	S							S	S					S	S		S																					T	T			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	R	R	R	M	P	A	M	M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R	W	V	Y	L	E	D	L	K	A	D	V	T	T	A	D	K	V	W	I	F	A	H	L	L	M
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.
Template Sequence		L	W	R	V	A	A	T	P	V	P	I	N	P	X	Y	K	S	F	E	L	E	H	I	L	N	D	S	E	A	T	T	L	V	V	H	S	X	L	Y	E	N	F	K	P	V	L	E	K	T	G	V	E	R	V	F	V	V	.	.	.	.	.	.	.	G	G	E	V	N	S	L	S	E	V	X	D	S	G	S	E
Template Known Secondary structure					T	T								T	T													T	T		S						G	G	G									T	T	S									.	.	.	.	.	.	.	T		S	S	S									S		S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	F	T	T	N	D	R	F	M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L	L	T	G	A	E
Query Conservation
Alig confidence																																			.																																		.
Template Conservation																																			.																																		.
Template Sequence		D	F	E	N	V	K	V	N	P	E	E	D	V	A	L	I	P	Y	T	G	G	T	T	G	P	K	G	V	X	L	T	H	F	.	N	L	A	A	N	A	L	Q	L	A	V	A	T	G	L	S	H	X	D	T	I	V	G	C	X	P	X	F	H	S	A	E	F	.	G	L	V	N	L	X	V	T	V	G	N	E
Template Known Secondary structure										T	T	T	S																						.																	T	T							S		T	T	S					.				T	T
Template Predicted Secondary structure																																			.																																		.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.					.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																																								.	.	.	.																																.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.																																.	.	.	.	.	.	.
Query Sequence		V	F	L	Y	P	S	P	L	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	.	.	.	.	A	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.																																.	.	.	.	.	.	.
Alig confidence								.																																.	.	.	.																																.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		Y	V	V	X	G	X	.	F	N	Q	E	X	L	A	E	N	I	E	K	Y	K	G	T	F	S	W	A	V	P	P	A	L	N	V	L	V	N	T	L	E	S	S	N	K	T	Y	D	W	S	Y	L	K	V	F	A	T	G	A	W	P	V	A	P	A	L	V	E	K	L	L	K	L	A	A	E	K	C	N	N	P
Template Known Secondary structure						S	S	.													T	T																					S							T	T								S	S																		S	S		T
Template Predicted Secondary structure								.
Template SS confidence
		247	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.						550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																										.																							.	.	.	.	.
Query SS confidence																										.																							.	.	.	.	.
Query Sequence		G	L	R	I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	N	V	P	M	A	.	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	G	.	.	.	.	.	I	E	E	G	G	R	L	Q	L	K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E
Query Conservation																										.																							.	.	.	.	.
Alig confidence																										.																							.	.	.	.	.
Template Conservation
Template Sequence		R	L	R	H	N	Q	I	W	G	X	T	E	A	C	P	X	V	T	T	N	P	P	L	R	L	D	K	S	T	T	Q	G	V	P	X	S	D	I	E	L	K	V	I	S	L	E	D	G	R	E	L	G	V	G	E	S	G	E	I	V	I	R	G	P	N	I	F	K	G	Y	W	K	R	E	K	E	N	Q	E	C
Template Known Secondary structure		T										G	G	G	S	S							G	G	G	G	G	G	T	T	S						T	T								S	S	S						T	T									S	T	T	S		S			T	T		T	T	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	T	A	E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A	L	V
Query Conservation
Alig confidence							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		W	W	Y	D	E	.	.	.	.	.	K	G	R	K	F	F	R	T	G	D	V	G	F	I	D	E	E	G	F	L	H	F	Q	D	R	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	E	L	E	A	L	L	X	K	H	E	A	V	X	D	V	A	V	I	G	K	P	D	P	.	.	.	K	A	F	I
Template Known Secondary structure						T	.	.	.	.	.	T															T	T	S								.	.	.	.	.	.	.	.	.	.	.	.										T	T	S	T	T													.	.	.
Template Predicted Secondary structure							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		406	.	.	.	410						.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.													.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.				.	.	.	.
		658	.	660	.	.	.	.			.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		L	F	T	T	D	N	E	.	.	L	T	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	D	I	R	Y	L	K	Q	M	P
Query Conservation									.	.
Alig confidence									.	.														.		.	.	.	.	.
Template Conservation																								.		.	.	.	.	.
Template Sequence		V	L	K	P	E	Y	R	G	K	V	D	E	E	D	I	I	E	W	V	R	E	R	.	I	.	.	.	.	.	S	R	E	V	E	F	V	E	E	L	P
Template Known Secondary structure					S	T	T	T	T	S												T	T	.		.	.	.	.	.
Template Predicted Secondary structure																								.		.	.	.	.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.		.						.	.	.	510	.	.	.	.	.	.	.