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Job DescriptionP31119
Confidence100.00%DateThu Jan 5 11:47:06 GMT 2012
Rank13Aligned Residues491
% Identity18%Templatec3eynB_
PDB info PDB header:ligaseChain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a; PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   206...210.........220.........230 .........240.........250 .........260.........270.........
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Query Sequence  LYESLLSAMYRFGAGKKCVEDVNFT. . . . PDSYRKLLTKTLFVGRILEK. . YSVEGERIGLMLPNAGISAAVIFGAIARR
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Template Conservation           
   

  

            

 

      

  
    

  

 
 
   
        

    
Template Sequence  LDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAG
Template Known Secondary structure  TTSS



SSS
TTT


TT


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TT
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   51........60.........70.........80.........90.........100.........110.........120.........130
 
   280.........290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  RMPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQ
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Template Sequence  LIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS. . . . . . TT
Template Known Secondary structure 


TT

T
S
TTTGGG
TT


SSS

TT
S
......S
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   131........140.........150.........160.........170.........180.........190.........200.. ..
 
   360.........370.........380.........390.........400.........410.........420.........430.........
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Query Sequence  VKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYP
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Template Conservation                         
                                                        
Template Sequence  HHCVETGSQEASAIYFTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL
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BTTS





TTTTS

TT



TTSTTT

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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   440.. .......450.........460.........470.. .......480.........490.........500.........510.......
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Query Sequence  SPL. HYRIVPELVYDRSCTVLFGTSTFLGHYARF. ANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECA
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Template Sequence  LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG
Template Known Secondary structure 
SS

S




TS
TTSS

TT


SS


S

TTT
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   288.290.........300.........310.........320.........330.........340.........350.........360.......
 
   518.520.........530.........540......... 550.........560. ........570.........580........
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Query Sequence  PVVSINVPMAAKPGTVGRILPGMDARLLSVPG. . . . IEEGGRLQLKGP. . . . . NIMNGYLRVEKPGVLEVPTAENVRGEM
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Template Sequence  LTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI. . . . . . . . . .
Template Known Secondary structure 

TTS


TT



TT


TTS
B

TT


SSB

TTS

TT
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   368.370.........380.........390.........400.........410.........420.........430.......
 
   589590.........600.........610.........620.........630.........640.........650.........660....
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Query Sequence  ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNE. . . .
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Template Sequence  RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS
Template Known Secondary structure  TT
TTS
GGG
TT
TSTTTTT
GGGGG
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   438.440.........450.........460.........470.........480.........490.........500.........510.......
 
   665....670.........680.........690.........700.........710...
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Query Sequence  . . . . LTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDE
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Template Sequence  HDPEQLTKELQQHVKSV. TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK
Template Known Secondary structure  S
.S
GGGS
S
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B
TT

B


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   518.520.........530.... .....540.........550.........560.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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