Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 8 Aligned Residues 499 % Identity 18% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																														.	.	.	.																					.
Query SS confidence																																														.	.	.	.																					.
Query Sequence		E	M	L	H	Q	I	M	M	E	A	R	M	A	V	R	P	R	E	T	L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	E	D	V	N	F	T	.	.	.	.	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K	.	Y	S	V	E	G	E	R	I	G	L	M
Query Conservation																																														.	.	.	.																					.
Alig confidence																																														.	.	.	.																					.
Template Conservation
Template Sequence		E	S	Y	E	D	F	Q	E	N	F	K	I	L	V	P	E	N	F	N	F	A	Y	D	V	V	D	V	Y	A	R	D	S	P	E	K	L	A	M	I	W	C	D	D	Y	G	N	E	K	I	F	T	F	K	D	L	K	Y	Y	S	D	K	A	A	N	F	F	V	K	H	G	I	G	K	G	D	Y	V	M	L	T
Template Known Secondary structure		S	S										B				S	S							T								S	T	T	S								S	S	S																								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		L	P	N	A	G	I	S	A	A	V	I	F	G	A	I	A	R	R	R	M	P	A	M	M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R	W	V	Y	L	.	.	.	.	E	D	L	K
Query Conservation																																																																										.	.	.	.
Alig confidence																																																																										.	.	.	.
Template Conservation
Template Sequence		L	K	S	R	Y	D	F	W	Y	C	M	L	G	L	H	K	L	G	A	I	A	V	P	A	T	H	M	L	K	T	R	D	I	V	Y	R	I	E	K	A	G	L	K	M	I	V	C	I	A	E	D	D	V	P	E	Q	V	D	E	A	H	A	E	C	G	D	I	P	L	K	K	A	K	V	G	G	D	V	L	E
Template Known Secondary structure			T	T		T													T								T	T														T		S						S	S	T	T														S									S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	T	T	A	D	K	V	W	I	F	A	H	L	L	M	P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	F	T	T	N	D	R	F	M	S	A	L	P	L	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	W	I	D	F	R	K	E	L	E	E	S	S	P	I	F	E	R	P	T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W
Template Known Secondary structure		T											S		S							G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S				T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																										.																																.
Query SS confidence																										.																																.
Query Sequence		S	F	G	L	T	V	G	L	F	T	P	L	L	T	G	A	E	V	F	L	Y	P	S	P	.	L	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	.	A	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T
Query Conservation																										.																																.
Alig confidence																										.																																.
Template Conservation
Template Sequence		G	K	C	V	W	G	K	L	Y	G	Q	W	I	A	G	C	A	V	F	V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	E	D	L	S	H	Y	N	F	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V
Template Known Secondary structure		T						T	T						T	T									S	S														T																	S		T	T	T	T	T			S								S	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.					550	.	.	.	.	.	.	.	.	.	560	.						.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.													.	.	.	.	.
Query SS confidence																																																								.	.	.	.													.	.	.	.	.
Query Sequence		K	Q	L	W	Q	D	K	F	G	L	R	I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	N	V	P	M	A	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	G	.	.	.	.	I	E	E	G	G	R	L	Q	L	K	G	P	.	.	.	.	.	N	I	M	N	G
Query Conservation																																																								.	.	.	.													.	.	.	.	.
Alig confidence																																																								.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		F	N	R	F	L	E	F	T	G	I	K	L	M	E	G	F	G	Q	T	E	T	V	V	T	I	A	T	F	P	W	M	E	P	K	P	G	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F	V	H
Template Known Secondary structure										S										T	T	S	S							T	T	S				T	T			B				T	T								T	T	S		B			T	T										T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A	E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	K	D	P	E	R	T	E	E	T	W	.	.	.	.	.	.	.	.	.	.	H	D	G	Y	Y	H	T	G	D	M	A	W	M	D	E	D	G	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G
Template Known Secondary structure			T	T										.	.	.	.	.	.	.	.	.	.		T	T												T	T	S								S	S	S					T	T													T	T	S	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.											.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.							.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		K	S	D	A	S	K	G	E	A	L	V	L	F	T	T	D	N	E	L	T	.	.	.	.	.	.	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	D	I	R	Y	L	K	Q	M	P	L
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.												.
Template Conservation																																							.
Template Sequence		V	P	D	P	V	R	G	Q	V	I	K	A	T	I	V	L	T	K	D	Y	T	P	S	D	S	L	K	N	E	L	Q	D	H	V	K	N	V	.	T	A	P	Y	K	Y	P	R	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure					T	T	T												T	T																			.	S		G	G	G			S						S
Template Predicted Secondary structure																																							.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.