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Job DescriptionP31119
Confidence100.00%DateThu Jan 5 11:47:06 GMT 2012
Rank7Aligned Residues483
% Identity16%Templatec3e7wA_
PDB info PDB header:ligaseChain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains
Resolution2.28 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   205....210.........220.........230.........240.........250 .........260.........270.........280..
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Query Sequence  TLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTKTLFVGRILEK. . YSVEGERIGLMLPNAGISAAVIFGAIARRRMP
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Template Sequence  KLLHAIQTHAETYPQTDAFRS. . QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPY
Template Known Secondary structure 
STTS..TTTTTS
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   2.......10.........20.. .......30.........40.........50.........60.........70.........
 
   283......290.........300.........310.........320.........330.........340.........350.........360..
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Query Sequence  AMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTADKVWIFAHLLMPRLAQVKQ
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Template Sequence  IPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQI. . . . . . . . . . . . . . . . . . . QTVSAEELLENEGGSVSQDQWV
Template Known Secondary structure  TTS
T

SSS

TT



SS...................
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   80.........90.........100.........110........ .120.........130.........140
 
   363......370.........380.........390.........400.........410.........420.........430.........440.
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Query Sequence  QPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSP.
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Template Sequence  KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV. MDLYPCLQSGGTLHCVTKDA
Template Known Secondary structure 
TTS

TTSS
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   141........150.........160.........170.........180.........190......... 200.........210.........
 
   442.......450.........460.........470.. .......480.........490.........500... ......510.......
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Query Sequence  . LHYRIVPELVYDRSCTVLFGTSTFLGHYARF. . ANPYDFYRLRYVVAGAEKLQESTKQLWQDKF. GLRILEGYGVTECA
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Template Sequence  VNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT
Template Known Secondary structure  S

S
TSTT
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   220.........230.........240.........250.........260.........270.........280.........290.........
 
   518.520.. .......530.........540......... 550.........560.........570.........580........
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Query Sequence  PVVSI. . . . . NVPMAAKPGTVGRILPGMDARLLSVPG. . . . IEEGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENVRGEM
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Template Sequence  VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS. . . . . . . H
Template Known Secondary structure  S
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TT
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B
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TTS
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TT

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   300.........310.........320.........330.........340.........350.........360.........370. .
 
   589590.........600.........610.........620.........630.........640.........650.........660......
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Query Sequence  ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELT. .
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Template Sequence  EGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE
Template Known Secondary structure  SSSTTSSSTTSTT
SSSS






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   373......380.........390.........400.........410.........420.........430.........440.........450..
 
   667..670.........680.........690.........700.........710.......
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Query Sequence  . . . . . RDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQH
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Template Sequence  KEFQLTSAIKKELAAS. LPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH
Template Known Secondary structure  S.S
GGGS
S
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B
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   453......460........ .470.........480.........490.........500.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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