Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 23 Aligned Residues 475 % Identity 15% Template c3dhvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate Resolution 2.00 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	E	D	V	N	F	T	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K	.	Y	S	V	E	G	E	R	I	G	L	M	L	P	N	A	G	I	S	A	A	V	I	F	G	A	I	A	R	R	R	M	P	A	M
Query Conservation																																															.
Alig confidence																						.	.																								.
Template Conservation																						.	.
Template Sequence		L	L	E	Q	I	E	K	W	A	A	E	T	P	D	Q	T	A	F	V	W	.	.	R	D	A	K	I	T	Y	K	Q	L	K	E	D	S	D	A	L	A	H	W	I	S	S	E	Y	P	D	D	R	S	P	I	M	V	Y	G	H	M	Q	P	E	M	I	I	N	F	L	G	C	V	K	A	G	H	A	Y	I	P
Template Known Secondary structure													S	T	T	S						.	.	T	T																							S	T	T										S	S														T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R	W	V	Y	L	E	D	L	K	A	D	V	T	T	A	D	K	V	W	I	F	A	H	L	L	M	P	R	L	A	Q	V	K	Q	Q	P
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	L	S	I	P	A	D	R	V	Q	R	I	A	E	N	S	G	A	K	L	L	L	S	A	T	A	V	T	V	T	D	L	P	V	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	E	D	N	L	K	D	I	F	F	T	H	K	G	N	T	P	N	P	E	H	A	V	K	G
Template Known Secondary structure				T	T	S													T							S	S				S	S			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T										T	T	T					G	G	G	S			T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	F	T	T	N	D	R	F	M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L	L	T	G	A	E	V	F	L	Y	P	S	P	L	.	H
Query Conservation																																																																																.
Alig confidence												.	.	.	.	.																																																																.
Template Conservation												.	.	.	.	.
Template Sequence		D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G	V	Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V	T	G	G	T	L	W	A	I	D	K	D	M	I	A	R
Template Known Secondary structure		T	S									.	.	.	.	.																						T	T			S	S							S		T	T	S	G	G	G										T	T													S
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																															.	.																																.
Query SS confidence																															.	.																																.
Query Sequence		Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	.	.	A	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	.	G	L	R	I	L	E	G	Y	G	V	T	E	C	A	P	V	V
Query Conservation																															.	.																																.
Alig confidence																															.	.																																.
Template Conservation
Template Sequence		P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S	T	P	S	F	A	E	M	C	L	M	E	A	S	F	S	E	S	M	L	P	N	M	K	T	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P	K	A	T	I	M	N	T	Y	G	P	T	E	A	T	V	A	V
Template Known Secondary structure													T																T	S	T	T		S	T	T	T	S	T	T								S	S															T	T										G	G	G	S	S		S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		521	.	.	.	.	.	.						.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.					550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure									.	.	.	.	.																							.	.	.	.
Query SS confidence									.	.	.	.	.																							.	.	.	.
Query Sequence		S	I	N	V	P	M	A	.	.	.	.	.	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	G	.	.	.	.	I	E	E	G	G	R	L	Q	L	K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A	E	N	V	R	G	E	M	E	R	G
Query Conservation									.	.	.	.	.																							.	.	.	.
Alig confidence									.	.	.	.	.																							.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.
Template Sequence		T	G	I	H	V	T	E	E	V	L	D	Q	Y	K	S	L	P	V	G	Y	C	K	S	D	C	R	L	L	I	M	K	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	S	V	S	V	G	Y	L	G	S	P	E	L	T	E	K	A	F	T	M	.	.	.	.	.	.	.	I	D	G	E
Template Known Secondary structure															S	S								T	T								S	S	S	S	B			T	T									S	T	T	S		S		B	T	T												.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.								.	.	.	.
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A	L	V	L	F	T	T	D	N	E	L	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		R	A	Y	K	T	G	D	A	G	Y	V	E	N	G	L	L	F	Y	N	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	D	Y	L	L	A	V	V	V	P	G	E	H	S	F	E	K	E	F
Template Known Secondary structure														T	T								G	G	G					S	S															S	T	T											S	S	S	S												S				S	S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
				667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	D	I	R	Y	L	K	Q	M	P	L	L	G	S	G	K	P	D	F	V	T	L	K	S	W	V	D
Query Conservation		.	.
Alig confidence		.	.												.
Template Conservation															.
Template Sequence		K	L	T	S	A	I	K	K	E	L	N	E	R	.	L	P	N	Y	M	I	P	R	K	F	M	Y	Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	K	L	L	S	E	V	T
Template Known Secondary structure													T	T	.	S		G	G	G	S		S						S				B		T	T	S	S	B
Template Predicted Secondary structure															.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.