 |
Job Description | P31119 | Confidence | 34.64% | Date | Thu Jan 5 11:47:06 GMT 2012 |
Rank | 43 | Aligned Residues | 98 |
% Identity | 8% | Template | c3bcxA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- |
PDBTitle: e1 dehydrase
|
Resolution | 2.40 Å |
|
 |
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | E | M | L | H | Q | I | M | M | E | A | R | M | A | V | R | P | R | E | T | L | Y | E | S | L | L | S | A | M | Y | R | F | G | A | G | K | K | C | V | E | D | V | N | F | T | P | D | S | Y | R | K | L | L | T | K | T | L | F | V | G | R | I | L | E | K | Y | S | V | E | G | E | R | I | G | L | M | L | P | N | A |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |
|
| . | . |
|   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|   | . | . | . |   |   |
Template Sequence |   |
T | K | E | L | Q | L | M | V | E | A | S | L | D | G | W | L | T | T | G | R | F | N | D | A | F | E | K | K | L | G | E | Y | L | G | V | P | Y | V | L | T | T | T | S | G | . |
. |
S | S | A | N | L | L | A | L | T | A | L | T | S | P | K | L | G | V | R | A | L | K | P | G | D | E | V | I | T | . |
. |
. |
V | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| B | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S |
|  | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G | G | G | G | S |
|
| T | T |
|  |  |  |  | . | . | . |  | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
. | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
. | . |
  |
  |   |
266 | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | I | S | A | A | V | I | F | G | A | I | A | R | R | R | M | P | A | M | M | N | Y | T |
Query Conservation |   |
  |
|   |   |   |
|   |
|
|   |   |   |   |
|   |
|   |
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
Template Sequence |   |
A | G | F | P | T | T | V | N | P | T | I | Q | N | G | L | I | P | V | F | V | D | V | D |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| B |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|