Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 30 Aligned Residues 325 % Identity 15% Template c2y27B_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia Resolution 1.60 Å

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		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		M	P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	.	.	.	F	T	T	N	D	R	F	M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L	L
Query Conservation																																																			.	.	.
Alig confidence																																																			.	.	.
Template Conservation
Template Sequence		S	Y	P	F	G	X	F	A	V	P	Q	D	R	I	S	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	A	D	I	D	T	W	A	N	L	V	A	R	S	I	R	A	A	G	A	R	R	G	D	K	V	H	V	S	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R
Template Known Secondary structure		T	T	T	T	T	T			S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.					.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		T	G	A	E	V	F	L	Y	P	S	P	L	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	A	N	.	.	.	.	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	G	L	R
Query Conservation																																														.	.	.	.
Alig confidence												.																																		.	.	.	.
Template Conservation												.
Template Sequence		A	G	L	T	V	I	P	F	G	G	.	G	Q	T	E	K	Q	V	Q	L	I	Q	D	F	R	P	D	I	I	X	V	T	P	S	Y	X	L	S	I	A	D	E	I	E	R	Q	G	L	D	P	V	Q	S	S	L	R	I	G	I	F	G	A	E	P	W	T	N	D	X	R	V	A	I	E	Q	R	X	G	I	D
Template Known Secondary structure		T	T								S	.																S																			T	T			G	G	G	S	S								S	S															T	S
Template Predicted Secondary structure												.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	N	V	P	M	A	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	.	.	.	.	.	G	I	E	E	G	G	R	L	Q	L	K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A
Query Conservation																																												.	.	.	.	.
Alig confidence																								.																				.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	D	I	Y	G	L	S	E	V	X	G	P	G	V	A	S	E	C	V	E	T	.	K	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	I	D	P	E	T	G	E	V	L	P	D	G	E	L	G	E	L	V	F	T	S	L	T	K	E	A	L	P	I	I	R	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T	T									T	T	T	.		S	S					T	T	T								T	T	T			B			T	T	S									S	S		S	S	S				S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.							.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	.	.	.	.	.	.	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A
Query Conservation																										.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	X	R	R	X	E	K	I	T	G	R	S	D	D	X	X	I	V	R	G	V	N	V	F	P	T	Q	I	E	E	Q	L	L	K	Q	R	A	L	A	P	H	Y	Q	I	V	L	T	K	E	G	P	L	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													S	S	S	S	S										G	G	G					T	T													T	T		T	T	B		S										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		656	.	.	.	660	.	.	.	.							.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.				.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																							.	.	.
Query SS confidence											.	.	.	.	.	.																							.	.	.
Query Sequence		L	V	L	F	T	T	D	N	E	.	.	.	.	.	.	L	T	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	.	.	.	D	I	R	Y	L	K	Q	M	P	L	L	G	S	G	K	P	D	F
Query Conservation											.	.	.	.	.	.																							.	.	.
Alig confidence											.	.	.	.	.	.														.									.	.	.												.
Template Conservation																														.																							.
Template Sequence		L	T	L	N	V	E	P	C	P	E	T	A	P	D	T	A	A	I	Q	V	A	K	Q	A	L	A	Y	D	.	I	K	S	L	I	G	V	T	A	V	I	N	V	L	P	V	N	G	I	E	R	S	.	V	G	K	A	R	R
Template Known Secondary structure								B		G	G	G	T	T																.																T	T		S				.	S	S	S
Template Predicted Secondary structure																														.																							.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions