Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 1 Aligned Residues 522 % Identity 16% Template c2vsqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module Resolution 2.60 Å

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		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	P	D	A	P	R	A	R	D	R	R	K	I	A	G	E	M	L	H	Q	I	M	M	E	A	R	M	A	V	R	P	R	E	T	L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	E	D	V	N	F	T	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K
Query Conservation
Alig confidence																																																									.	.
Template Conservation																																																									.	.
Template Sequence		N	P	D	Q	P	V	S	T	I	N	L	V	D	D	R	E	R	E	F	L	L	T	G	L	N	P	P	A	Q	A	H	E	T	K	P	L	T	Y	W	F	K	E	A	V	N	A	N	P	D	A	P	A	L	T	Y	.	.	S	G	Q	T	L	S	Y	R	E	L	D	E	E	A	N	R	I	A	R	R	L	Q	K
Template Known Secondary structure		S	T	T	S	B	G	G	G														T	T	T	S																							T	T	S					S	.	.	S	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
			251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	S	V	E	G	E	R	I	G	L	M	L	P	N	A	G	I	S	A	A	V	I	F	G	A	I	A	R	R	R	M	P	A	M	M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R
Query Conservation		.
Alig confidence		.																																																																							.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		H	G	A	G	K	G	S	V	V	A	L	Y	T	K	R	S	L	E	L	V	I	G	I	L	G	V	L	K	A	G	A	A	Y	L	P	V	D	P	K	L	P	E	D	R	I	S	Y	M	L	A	D	S	A	A	A	C	L	L	T	H	Q	E	M	K	E	Q	A	A	E	L	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T			T	T									S	S													T	T								T	T	S													T								S	T	T		T	T	S	T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	Y	L	E	D	L	K	A	D	V	T	T	A	D	K	V	W	I	F	A	H	L	L	M	P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	F	T	T	N	D	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																														.
Template Conservation		.	.	.	.	.	.	.	.																																																														.
Template Sequence		.	.	.	.	.	.	.	.	Y	T	G	T	T	L	F	I	D	D	Q	T	R	F	E	E	Q	A	S	D	P	A	T	A	I	D	P	N	D	P	A	Y	I	M	Y	T	S	G	T	T	G	K	P	K	G	N	I	T	T	H	A	N	I	Q	G	L	V	K	H	V	D	.	Y	M	A	F	S	D	Q	D	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	.			S					S	S		G	G	G	G	G	S		S	S								T	T	S										S	S	S	S																S	S			.	S	S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																														.
Template SS confidence
										580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L	L	T	G	A	E	V	F	L	Y	P	S	P	L	.	.	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	A	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G
Query Conservation																																			.	.
Alig confidence														.																					.	.																															.
Template Conservation														.																																																					.
Template Sequence		L	S	V	S	N	Y	A	F	D	A	F	T	.	F	D	F	Y	A	S	M	L	N	A	A	R	L	I	I	A	D	E	H	T	L	L	D	T	E	R	L	T	D	L	I	L	Q	E	N	V	N	V	M	F	A	T	T	A	L	F	N	L	L	T	D	A	.	G	E	D	W	M	K	G	L	R	C	I	L	F	G
Template Known Secondary structure					S		T	T	S	T				.								T	T	T								G	G	G	T	T													T																		.		S					T		S
Template Predicted Secondary structure														.																																																					.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.		.	.	.	.	.	720	.	.	.	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.					.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.					.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																										.	.	.	.																					.	.	.	.
Query SS confidence																		.																										.	.	.	.																					.	.	.	.
Query Sequence		A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	.	G	L	R	I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	N	V	P	M	A	A	.	.	.	.	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	.	.	.	.	G	I	E	E	G	G	R	L	Q	L
Query Conservation																		.																										.	.	.	.																					.	.	.	.
Alig confidence																		.																										.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		G	E	R	A	S	V	P	H	V	R	K	A	L	R	I	M	G	P	G	K	L	I	N	C	Y	G	P	T	E	G	T	V	F	A	T	A	H	V	V	H	D	L	P	D	S	I	S	S	L	P	I	G	K	P	I	S	N	A	S	V	Y	I	L	N	E	Q	S	Q	L	Q	P	F	G	A	V	G	E	L	C	I
Template Known Secondary structure		S	S																T	T									G	G	G	S	S		S										S	S		S	S				B				T	T								T	T	S		B			T	T
Template Predicted Secondary structure
Template SS confidence
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A	E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		S	G	M	G	V	S	K	G	Y	V	N	R	A	D	L	T	K	E	K	F	I	E	N	P	F	K	.	.	.	P	G	E	T	L	Y	R	T	G	D	L	A	R	W	L	P	D	G	T	I	E	Y	A	G	R	I	D	D	Q	V	K	I	R	G	H	R	I	E	L	E	E	I	E	K	Q	L	Q	E	Y	P	G
Template Known Secondary structure				T	T					B	T	T													T	T	S	.	.	.	T	T														T	T	S								G	G	G					T	T															S	S	S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.				.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.		.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A	L	V	L	F	T	T	D	N	E	.	L	T	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	A	V	P	R	D	I	R	Y	L	K	Q	M	P	L	L	G	S	G	K	P	D	F	V	T	L	K	S	W	V	D	E	A	E	Q	H
Query Conservation																												.
Alig confidence																												.														.
Template Conservation																																										.
Template Sequence		V	K	D	A	V	V	V	A	D	R	H	E	S	G	D	A	S	I	N	A	Y	L	V	N	R	T	Q	L	S	A	E	D	V	K	A	H	L	K	K	Q	.	L	P	A	Y	M	V	P	Q	T	F	T	F	L	D	E	L	P	L	T	T	N	G	K	V	N	K	R	L	L	P	K	P	D	Q	D	Q	L	A	E
Template Known Secondary structure													S	S	S											S	S	S	S													.	S		G	G	G	S		S						S						S	S		S	S			S							G	G	G	G
Template Predicted Secondary structure																																										.
Template SS confidence
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.		.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
		718
Predicted Secondary structure
Query SS confidence
Query Sequence		D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		965