Job Description P31119 Confidence 100.00% Date Thu Jan 5 11:47:06 GMT 2012 Rank 14 Aligned Residues 502 % Identity 20% Template c2d1tA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:luciferin 4-monooxygenase; PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue Resolution 1.45 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																											.	.																											.
Query SS confidence																											.	.																											.
Query Sequence		V	R	P	R	E	T	L	Y	E	S	L	L	S	A	M	Y	R	F	G	A	G	K	K	C	V	.	.	E	D	V	N	F	T	P	D	S	Y	R	K	L	L	T	K	T	L	F	V	G	R	I	L	E	K	.	Y	S	V	E	G	E	R	I	G	L	M	L	P	N	A	G	I	S	A	A	V	I	F	G	A	I
Query Conservation																											.	.																											.
Alig confidence																											.	.																		.									.
Template Conservation																																														.
Template Sequence		P	I	E	E	G	S	A	G	T	Q	L	R	K	Y	M	E	R	Y	A	K	L	G	A	I	A	F	T	N	A	V	T	G	V	D	Y	S	Y	A	E	Y	L	E	K	S	.	C	L	G	K	A	L	Q	N	Y	G	L	V	V	D	G	R	I	A	L	C	S	E	N	C	E	E	F	F	I	P	V	I	A	G	L
Template Known Secondary structure					S	S																	T							T	T	T														.										T			T	T								S	S		T	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.						.	.	.	350	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		A	R	R	R	M	P	A	M	M	N	Y	T	A	G	V	K	G	L	T	S	A	I	T	A	A	E	I	K	T	I	F	T	S	R	Q	F	L	D	K	G	K	L	W	H	L	P	E	Q	L	T	Q	V	R	W	V	Y	L	E	D	L	K	A	D	V	T	T	A	D	K	V	.	.	.	.	.	W	I	F	A	H
Query Conservation																																																																								.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.
Template Conservation
Template Sequence		F	I	G	V	G	V	A	P	T	N	E	I	Y	T	L	R	E	L	V	H	S	L	G	I	S	K	P	T	I	V	F	S	S	K	K	G	L	D	K	V	I	T	V	Q	K	T	V	T	T	I	K	T	I	V	I	L	D	S	K	V	D	Y	R	G	Y	Q	C	L	D	T	F	I	K	R	N	T	P	P	G	Y
Template Known Secondary structure				T								T	T	S															S						T	T	T											S	T	T							T	T		S	S		B	T	T	B		B								T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		L	L	M	P	R	L	A	Q	V	K	Q	Q	P	E	E	E	A	L	I	L	F	T	S	G	S	E	G	H	P	K	G	V	V	H	S	H	K	S	I	L	A	N	V	E	Q	I	K	T	I	A	D	F	T	T	.	.	N	D	R	F	M	S	A	L	P	L	F	H	S	F	G	L	T	V	G	L	F	T	P	L
Query Conservation																																																								.	.
Alig confidence																																																								.	.
Template Conservation
Template Sequence		Q	A	S	S	F	K	T	V	E	V	D	R	K	E	Q	V	A	L	I	M	N	S	S	G	S	T	G	L	P	K	G	V	Q	L	T	H	E	N	I	V	T	R	F	S	H	A	R	D	P	I	Y	G	N	Q	V	S	P	G	T	A	V	L	T	V	V	P	F	H	H	G	F	G	M	F	T	T	L	G	Y	L
Template Known Secondary structure			G	G	G								T	T	T	S								S	S		S	S	S																			T		T	T	T	S					T	T							S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.
Predicted Secondary structure																																													.	.																																.
Query SS confidence																																													.	.																																.
Query Sequence		L	T	G	A	E	V	F	L	Y	P	S	P	L	H	Y	R	I	V	P	E	L	V	Y	D	R	S	C	T	V	L	F	G	T	S	T	F	L	G	H	Y	A	R	F	.	.	A	N	P	Y	D	F	Y	R	L	R	Y	V	V	A	G	A	E	K	L	Q	E	S	T	K	Q	L	W	Q	D	K	F	.	G	L	R
Query Conservation																																													.	.																																.
Alig confidence													.																																.	.																																.
Template Conservation													.
Template Sequence		I	C	G	F	R	V	V	M	L	T	K	.	F	D	E	E	T	F	L	K	T	L	Q	D	Y	K	C	T	N	V	I	L	V	P	T	L	F	A	I	L	N	K	S	E	L	L	N	K	Y	D	L	S	N	L	V	E	I	A	S	G	G	A	P	L	S	K	E	V	G	E	A	V	A	R	R	F	N	L	P	G
Template Known Secondary structure				T									.													T	T								G	G	G								S		G	G	G	S			T	T								S	S														T	T		S
Template Predicted Secondary structure													.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		I	L	E	G	Y	G	V	T	E	C	A	P	V	V	S	I	N	V	P	M	A	A	K	P	G	T	V	G	R	I	L	P	G	M	D	A	R	L	L	S	V	P	.	.	.	.	.	G	I	E	E	G	G	R	L	Q	L	K	G	P	N	I	M	N	G	Y	L	R	V	E	K	P	G	V	L	E	V	P	T	A
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		V	R	Q	G	Y	G	L	T	E	T	T	S	A	I	I	I	T	P	E	G	D	D	K	P	G	A	S	G	K	V	V	P	L	F	K	A	K	V	I	D	L	D	T	K	K	S	L	G	P	N	R	R	G	E	V	C	V	K	G	P	M	L	M	K	G	Y	V	N	N	P	E	A	T	K	E	L	I	.	.	.
Template Known Secondary structure									G	G	G	S	S							T	T				T	T			B				T	T								T	T	T			B			T	T									S	T	T	S		S			T	T									B	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	V	R	G	E	M	E	R	G	W	Y	D	T	G	D	I	V	R	F	D	E	Q	G	F	V	Q	I	Q	G	R	A	K	R	F	A	K	I	A	G	E	M	V	S	L	E	M	V	E	Q	L	A	L	G	V	S	P	D	K	V	H	A	T	A	I	K	S	D	A	S	K	G	E	A	L	V	L	F	T	T
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	E	E	G	W	L	H	T	G	D	I	G	Y	Y	D	E	E	K	H	F	F	I	V	D	R	L	K	S	L	I	K	Y	K	G	Y	Q	V	P	P	A	E	L	E	S	V	L	L	Q	H	P	S	I	F	D	A	G	V	A	G	V	P	D	P	V	A	G	E	L	P	G	A	V	V	V
Template Known Secondary structure		.	.	.	.	.	.		T	T	S												T	T									G	G	G		B		B	T	T			B											T	S	T	T												T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		662	.	.				.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.		.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure					.	.	.																			.
Query SS confidence					.	.	.																			.
Query Sequence		D	N	E	.	.	.	L	T	R	D	K	L	Q	Q	Y	A	R	E	H	G	V	P	E	L	.	A	V	P	R	D	I	R	Y	L	K	Q	M	P	L	L	G	S	G	K	P	D	F	V	T	L	K	S	W	V	D	E
Query Conservation					.	.	.																			.
Alig confidence					.	.	.														.					.
Template Conservation																					.
Template Sequence		L	E	S	G	K	N	M	T	E	K	E	V	M	D	Y	V	A	S	Q	.	V	S	N	A	K	R	L	R	G	G	V	R	F	V	D	E	V	P	K	G	L	T	G	K	I	D	G	R	A	I	R	E	I	L	K	K
Template Known Secondary structure				T	T														T	T	.	S		G	G	G	S		T	T						S	S			B		T	T	S		B											S
Template Predicted Secondary structure																					.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.