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Job DescriptionP31119
Confidence100.00%DateThu Jan 5 11:47:06 GMT 2012
Rank17Aligned Residues490
% Identity16%Templatec1amuB_
PDB info PDB header:peptide synthetaseChain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230.........240.........250 .........260....
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Query Sequence  GEMLHQIMMEARMAVRPRETLYESLLSAMYRFGAGKKCVEDVNFTPDSYRKLLTKTLFVGRILEK. YSVEGERIGLMLPN
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Template Sequence  EEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC. . ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK
Template Known Secondary structure  TT






TT


TTS..TTT

TT


S
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   21........30.........40.........50.........60 .........70.........80.........90........
 
   265....270.........280.........290.........300.........310.........320.........330.........340....
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Query Sequence  AGISAAVIFGAIARRRMPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTTAD
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Template Sequence  SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNQFNGQVEIF. . . . . . . . . . . . . . . . .
Template Known Secondary structure  STT


TTS


S
GGGGGGG




S
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   99100.........110.........120.........130.........140.........150.........160.
 
   345....350.........360.........370.........380.........390.........400.........410.........420....
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Query Sequence  KVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVG
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Template Sequence  . . . . . . EEDTIKIREGTNLHVPSKSTDLAYVIYTNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV. WE
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SSGGGS

S






TTS



TS


TT

S
TTST.
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   163......170.........180.........190.........200.........210.........220.........230... ..
 
   425....430.........440. ........450.........460.........470.........480.........490.........500..
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Query Sequence  LFTPLLTGAEVFLYPSP. . LHYRIVPELVYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDK
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Template Sequence  MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP. . . . TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEK
Template Known Secondary structure  TTT


T
TT


....TTS
TTT

S
SSS


TTT
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   241........250.........260.........270.........280. ........290.........300.........310......
 
   503 ......510.........520.........530.........540......... 550.........560.........570.......
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Query Sequence  F. GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPG. . . . IEEGGRLQLKGPNIMNGYLRVEKPGVLE
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Template Conservation                                  
                                   
       
   
Template Sequence  VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK
Template Known Secondary structure  S

GGGSS
S

SS


SS


B
TT
TTS
B

TT

TT


TT
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   578.580.........590.........600.........610.........620.........630.........640.........650.......
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Query Sequence  VPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKVHATAIKSDASKGEALV
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Template Sequence  FVDNPFV. . . PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC
Template Known Secondary structure 
SSS...TTS
TTS
GGGTTTSTT
TTS
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   397..400... ......410.........420.........430.........440.........450.........460.........470...
 
   658.660.... .....670.........680.........690.........700.........
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Query Sequence  LFTTDNE. LTRDKLQQYAREHGVPELAVPRDIRYLKQMPLLGSGKPDFVTLKS
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Template Sequence  AYFVSEKHIPLEQLRQFSSEE. LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE
Template Known Secondary structure  SS


.S
GGGS
S
SS

B
TTSSB
GGGS

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   474.....480.........490.... .....500.........510.........520.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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