Return to main results Retrieve Phyre Job Id

Job DescriptionP96329
Confidence98.39%DateThu Jan 5 12:33:17 GMT 2012
Rank14Aligned Residues217
% Identity18%Templated2ce7a2
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain
Resolution2.44

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15.... 20.........30........ .40.........50.........60.........70.........80..
Predicted Secondary structure 




...



.........


















Query SS confidence 




. . .


















. . . . . . . . .











































Query Sequence  AAVED. . . VPEDRYGFGNIAENISRSI. . . . . . . . . LTLPLEASNVVGIEGAWGSGKTSLLNLILRNLALKKDAHTHVLH
Query Conservation   

  ...   
 


   
  

  
.........         



 
 






 

     
         

 
Alig confidence 




...


















.........































......





Template Conservation   
        
 
 
 
  
  
 
 
                   


 

 




 

  

   ......      
Template Sequence  KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA. . . . . . NVPFFH
Template Known Secondary structure 



S



GGG

S

TTTT



S

TTSS......T

Template Predicted Secondary structure 





























......



Template SS confidence 















































































   151........160.........170.........180.........190.........200.........210........ .220....
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  ISPWLSGGSPVEALFLPVATVIQQEMEIRYPPKGFKKLWRKYLLSPEAQKVIEYAQDTSSRVLPLVQYIGQFSSIINWIA
Query Conservation 



         
       
                  
                                       
Alig confidence 










.....................................................................
Template Conservation 
          .....................................................................
Template Sequence  ISGSDFVELFV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGGTTT

T.....................................................................
Template Predicted Secondary structure 





.....................................................................
Template SS confidence 















































































   225....230.....
 
   163......170.........180.........190.........200.........210 .........220.........230.......
Predicted Secondary structure 












.....






Query SS confidence 















































. . . . .


























Query Sequence  GGIKVFSDSRLAVDQKTTTKLRAEIAGQLVSLDLKFIVVMDDLDRLEP. . . . . SQVAEVFRLVRAVADLPRFTHILCYDR
Query Conservation                       
  
   
      










  .....  
  

  

   
 







 
 
Alig confidence  ..............













..

















.....
























..
Template Conservation  ..............   
         
..      

 


 
 
                            
  
..
Template Sequence  . . . . . . . . . . . . . . GVGAARVRDLFAQA. . KAHAPCIVFIDEIDAVGRHDEREQTLNQLLVEMDGFDSKEGIIVMAAT. .
Template Known Secondary structure  ..............T..T
STGGGT



S
GGGT..
Template Predicted Secondary structure  ................











..
Template SS confidence 















































































   236...240......... 250.........260.........270.........280.........290.......
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  QIITHAVEHALNIEDGSRYLQKIIQLSFKLPRPEAFDLRNEFRQRAEALYQQINNQPPDSGMVRDLIAVTDTYGAALSTP
Query Conservation    
  

        
  







   

      
       
            
                 
 

Alig confidence  ........







































......


















.....

Template Conservation  ........
          
  

        
    
  
       ......           

  
 
 .....
 
Template Sequence  . . . . . . . . NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN. . . . . . KPLAEDVNLEIIAKRTPGF. . . . . VG
Template Known Secondary structure  ........S
GGGS
GGGGSTTSS





TT......S
B
TT

T
TT
.....
Template Predicted Secondary structure  ........





















......








.....
Template SS confidence 















































































   307..310.........320.........330.........340...... ...350.........360..... ..
 
   318.320...... ...330.........340...
Predicted Secondary structure  .




Query SS confidence 








.
















Query Sequence  REIHQAINS. LIFLYPGMRDFVYFPDL
Query Conservation 
 


  
 .
         

   

Alig confidence 








.
















Template Conservation   

  
   
   
       
   
 
Template Sequence  ADLENLVNEAALLAAREGRDKITMKDF
Template Known Secondary structure  TT
SSB
Template Predicted Secondary structure 






Template SS confidence 


























   368.370.........380.........390....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions