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Job DescriptionP96329
Confidence98.35%DateThu Jan 5 12:33:17 GMT 2012
Rank16Aligned Residues208
% Identity16%Templatec3pxiB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc
Resolution6.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.. .......50.........60.........70.........80.........90....
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Query Sequence  PEDRYGFGNIAENISRSILTLP. . . . . . LEASNVVGIEGAWGSGKTSLLNLILRNLALKKDAHTHVLHISPWLSGGSPVE
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Template Sequence  HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE. . . SMIRIDMSEYMEKHST
Template Known Secondary structure  TTS
S
TTT
S
TTS
SS
TTSSS
TT...
GGGG
SS


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   507..510.........520.........530.........540.........550.........560....... ..570.........580...
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  ALFLPVATVIQQEMEIRYPPKGFKKLWRKYLLSPEAQKVIEYAQDTSSRVLPLVQYIGQFSSIINWIAGGIKVFSDSRLA
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Template Sequence  SLTEKV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   584.....
 
   175....180.........190.........200.........210.........220.. .......230...... ...240.....
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Query Sequence  VDQKTTTKLRAEIAGQLVSLDLKFIVVMDDLDRLEPSQVAEVFRLVRA. . . . VADLPRFTHILCYD. . . . . RQIITHAVE
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Template Sequence  . . . . . . . . . . . . . . . . . . RRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTTVDFRNTILIMTSNVGASEKDKVMGELK
Template Known Secondary structure  ..................
SSS
GGGS
SB



B
TT
SSSTT

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   607..610.........620.........630.........640.........650.........660........
 
   246...250.........260.........270.........280.........290.........300.........310 .........320....
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Query Sequence  HALNIEDGSRYLQKIIQLSFKLPRPEAFDLRNEFRQRAEALYQQINNQPPDSGMVRDLIAVTDTY. GAALSTPREIHQAI
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Template Sequence  RAF. . . . RPEFINRIDEI. . . IVFHEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAI
Template Known Secondary structure  S....
TTSS...


TTT

GGG

TTTTTTT
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   695.. ..700........ .710.........720.........730.........740.........750.........760.......
 
   325....330
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Query Sequence  NSLIFL
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Template Sequence  QKHVED
Template Known Secondary structure  T
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   770.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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