Job Description P96329 Confidence 95.12% Date Thu Jan 5 12:33:17 GMT 2012 Rank 207 Aligned Residues 266 % Identity 16% Template c3nbxX_ PDB info PDB header:hydrolase Chain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp Resolution 2.91 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	R	Y	G	F	G	N	I	A	E	N	I	S	R	S	I	L	T	L	P	L	E	A	S	N	V	V	G	I	E	G	A	W	G	S	G	K	T	S	L	L	N	L	I	L	R	N	L	A	L	K	K	D	A	H	T	H	V	L	H	I	S	P	W	L	S	G	G	S	P	V	E	A	L	F	L	P	V
Query Conservation
Alig confidence																									.	.	.	.	.																							.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.																							.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		E	K	G	L	Y	E	R	S	H	A	I	R	L	C	L	L	A	A	L	S	G	E	S	.	.	.	.	.	V	F	L	L	G	P	P	G	I	A	K	S	L	I	A	R	R	L	K	F	A	F	.	.	.	Q	N	A	R	A	F	E	Y	L	M	T	R	F	S	T	P	E	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		S	S															T			.	.	.	.	.							S	S	S	S								G	G	G	G	B	.	.	.	S	S										T	T						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.																							.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	V	I	Q	Q	E	M	E	I	R	Y	P	P	K	G	F	K	K	L	W	R	K	Y	L	L	S	P	E	A	Q	K	V	I	E	Y	A	Q	D	T	S	S	R	V	L	P	L	V	Q	Y	I	G	Q	F	S	S	I	I	N	W	I	A	G	G	I	K	V	F	S	D	S	R	L	A	V	D	Q	K	T	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	G	P	L	S	E	R	L	T	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B			B			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																															82	.	.	.	.	.	.	.	90	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		T	K	L	R	A	E	I	A	G	Q	L	V	S	L	D	L	K	F	I	V	V	M	D	D	L	D	R	L	E	P	S	Q	V	A	E	V	F	R	L	V	R	.	.	.	.	.	.	.	.	A	V	A	D	L	P	R	F	T	H	I	L	C	Y	D	R	Q	I	I	T	H	A	V	E	H	A	L	N	I	E	D
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Y	L	P	E	A	E	I	V	F	L	D	E	I	W	K	A	G	P	A	I	L	N	T	L	L	T	A	I	N	E	R	Q	F	R	N	G	A	H	V	E	K	I	P	M	R	L	L	V	A	A	S	N	.	.	.	.	.	.	.	.	E	L	P	E	A	D	S	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	G		S						S	G	G	G															S	S					S	S	S														S	.	.	.	.	.	.	.	.	S				T	T		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.
Template SS confidence
														104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.																			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																				.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence																				.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence		G	S	R	Y	L	Q	K	I	I	Q	L	S	F	K	L	P	R	P	.	E	A	F	D	L	R	N	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	R	A	E	A	L	Y	Q	Q	I	N	N	Q	P	P	D	S	G	M	V	R	D	L	I	A	V	T	D	T	Y	G	A	.
Query Conservation																				.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence										.										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation										.
Template Sequence		L	E	A	L	Y	D	R	M	.	L	I	R	L	W	L	D	K	V	Q	D	K	A	N	F	R	S	M	L	T	S	Q	Q	D	E	N	D	N	P	V	P	D	A	L	Q	V	T	D	E	E	Y	E	R	W	Q	K	E	I	G	E	I	T	L	P	D	H	V	F	E	L	I	F	M	L	R	Q	Q	L	D	K	L
Template Known Secondary structure		T					T	T		.								S												T					T	T	S			S		T	T	T	S	B													T	T		B
Template Predicted Secondary structure										.
Template SS confidence
		164	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
					313	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																.
Query SS confidence		.	.	.																.
Query Sequence		.	.	.	A	L	S	T	P	R	E	I	H	Q	A	I	N	S	L	.	I	F	L	Y	P	G	M	R	D	F	V	Y	F	P	D	L	C	L	L	Q	L	I	R	V	T	N	P	A	L	Y	D	W	T	E	H	Y	L	T	E	R	S	V	I	E	T	G	Q	G	M	L	S	D	G	E	K	A	D	F	R	E	G
Query Conservation		.	.	.																.
Alig confidence		.	.	.																.
Template Conservation
Template Sequence		P	D	A	P	Y	V	S	D	R	R	W	K	K	A	I	R	L	L	Q	A	S	A	F	F	S	G	R	S	A	V	A	P	V	D	L	I	L	L	K	D	C	L	W	Y	D	A	Q	S	L	N	L	I	Q	Q	Q	I	D	V	L	M	T	G	H	A	W	Q	Q	Q	G	M	L	T	R	L	G	A	I	V	Q	R
Template Known Secondary structure		S	S	S																						T	T		S	B			G	G	G	G	G	G	G	G	G	T	S		S	S																		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		389	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions