Job Description P96329 Confidence 97.68% Date Thu Jan 5 12:33:17 GMT 2012 Rank 48 Aligned Residues 209 % Identity 15% Template c3h4mC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: aaa atpase domain of the proteasome- activating nucleotidase Resolution 3.11 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.											.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	R	Y	G	F	G	N	I	A	E	N	I	S	R	S	I	.	.	.	.	.	.	.	.	.	.	L	T	L	P	L	E	A	S	N	V	V	G	I	E	G	A	W	G	S	G	K	T	S	L	L	N	L	I	L	R	N	L	A	L	K	K	D	A	H	T	H	V	L	H	I	S	P	W	L	S	G	G	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		E	D	I	G	G	L	E	K	Q	M	Q	E	I	R	E	V	V	E	L	P	L	K	H	P	E	L	F	E	K	V	G	I	E	P	P	K	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	T	E	T	.	.	.	.	.	.	N	A	T	F	I	R	V	V	G	S	E	L	V	K	K
Template Known Secondary structure		G	G			S										T	T	T	T													T					S						S	S	S	S	S	S												T	.	.	.	.	.	.	T								G	G	G	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	E	A	L	F	L	P	V	A	T	V	I	Q	Q	E	M	E	I	R	Y	P	P	K	G	F	K	K	L	W	R	K	Y	L	L	S	P	E	A	Q	K	V	I	E	Y	A	Q	D	T	S	S	R	V	L	P	L	V	Q	Y	I	G	Q	F	S	S	I	I	N	W	I	A	G	G	I	K	V	F	S	D	S
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210															.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	A	V	D	Q	K	T	T	T	K	L	R	A	E	I	A	G	Q	L	V	S	L	D	L	K	F	I	V	V	M	D	D	L	D	R	L	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	V	A	E	V	F	R	L	V	R	A	V	A	D	L	P	R	F	T	H	I	L	C	Y	D	R
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation		.	.	.	.	.																																																																											.
Template Sequence		.	.	.	.	.	F	I	G	E	G	A	S	L	V	K	D	I	F	K	L	A	K	E	K	A	P	S	I	I	F	I	D	E	I	D	A	I	A	A	K	R	T	D	A	L	T	G	G	D	R	E	V	Q	R	T	L	M	Q	L	L	A	E	M	D	G	F	D	A	R	G	D	V	K	I	I	G	A	T	N	.
Template Known Secondary structure		.	.	.	.	.	S	T	T	T	T	T													T		S								G	G	G	T	S	B			S	S	S				S	T														T	T	S	S		S	S	S	S								S	.
Template Predicted Secondary structure		.	.	.	.	.																																																																											.
Template SS confidence
							244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	I	I	T	H	A	V	E	H	A	L	N	I	E	D	G	S	R	Y	L	Q	K	.	I	I	Q	L	S	F	K	L	P	R	P	E	A	F	D	L	R	N	E	F	R	Q	R	A	E	A	L	Y	Q	Q	I	N	N	Q	P	P	D	S	G	M	V	R	D	L	I	A	V	T	D	T	Y	G	A	A	L	S	T
Query Conservation																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.																										.	.	.	.	.	.																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.																					.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	P	D	I	L	D	P	A	I	L	R	P	G	R	F	D	R	I	I	E	V	P	A	P	D	E	K	G	R	L	E	I	L	K	I	H	T	R	.	.	.	.	.	.	K	M	N	L	A	E	D	V	N	L	E	E	I	A	K	M	T	E	G	C	.	.	.	.	.	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S	G	G	G	B						S	T	T	S																						T	T	T	.	.	.	.	.	.	T	S		B		S	S								T	T	S	T	T		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.																					.	.	.	.	.
Template SS confidence
												318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.							.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.						.
		317	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	R	E	I	H	Q	A	I	N	S	.	L	I	F	L	Y	P	G	M	R	D	F	V	Y	F	P	D	L
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		G	A	E	L	K	A	I	C	T	E	A	G	M	N	A	I	R	E	L	R	D	Y	V	T	M	D	D	F
Template Known Secondary structure																			T	T		S	S	B
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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