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Job DescriptionP96329
Confidence97.84%DateThu Jan 5 12:33:17 GMT 2012
Rank34Aligned Residues221
% Identity17%Templatec2r65A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30........ .40.........50.........60.........70.........80...
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Query Sequence  LDAAVEDVPEDRYGFGNIAENISRSI. . . . . . . . . LTLPLEASNVVGIEGAWGSGKTSLLNLILRNLALKKDAHTHVLHI
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Template Sequence  AEKP. NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA. . . . . . HVPFFSM
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   162... ....170.........180.........190.........200.........210.........220....... ..230....
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  SPWLSGGSPVEALFLPVATVIQQEMEIRYPPKGFKKLWRKYLLSPEAQKVIEYAQDTSSRVLPLVQYIGQFSSIINWIAG
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Template Sequence  GGSSFIEMFV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TGGGGS

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   235....240....
 
   164.....170.........180.........190.........200........ .210.........220.........230........
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Query Sequence  GIKVFSDSRLAVDQKTTTKLRAEIAGQLVSLDLKFIVVMDDLDRL. . . . . EPSQVAEVFRLVRAVADLPRFTHILCYDRQ
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Template Sequence  . . . . . . . . . . . . . GLGASRVRDLFETA. . KKQAPSIIFIDEIDAIGKNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR
Template Known Secondary structure  .............SS
STT..T
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STTTSSSTT

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   245....250........ .260.........270.........280.........290.........300.........
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  IITHAVEHALNIEDGSRYLQKIIQLSFKLPRPEAFDLRNEFRQRAEALYQQINNQPPDSGMVRDLIAVTDTYGAALSTPR
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Template Sequence  P. . . . . . . . . EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK. . . . . . GVKLANDVNLQEVAKLTAGL. . . . . AGA
Template Known Secondary structure  T.........TSS
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   320 .........330.........340.........350...... ...360.........370...... ...
 
   319320.........330. ........340.....
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Query Sequence  EIHQAINSLIFLY. PGMRDFVYFPDLCL
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Template Sequence  DLANIINEAALLAGRNNQKEVRQQHLKE
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   380.........390.........400.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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