Job Description P96329 Confidence 97.50% Date Thu Jan 5 12:33:17 GMT 2012 Rank 56 Aligned Residues 198 % Identity 18% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.										.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		E	D	R	Y	G	F	G	N	I	A	E	N	I	S	R	S	I	L	T	L	.	.	.	.	.	.	.	.	.	P	L	E	A	S	N	V	V	G	I	E	G	A	W	G	S	G	K	T	S	L	L	N	L	I	L	R	N	L	A	L	K	K	D	A	H	T	H	V	L	H	I	S	P	W	L	S	G	G	S	P
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																														.	.	.	.	.																	.
Template Conservation																																																												.	.	.	.	.																	.
Template Sequence		S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	K	.
Template Known Secondary structure		G	G	S		S																			G	G	G	S		T	T					S						S	S	S	S	S													T	.	.	.	.	.	T	S										S	S			S	.
Template Predicted Secondary structure																																																												.	.	.	.	.																	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	A	L	F	L	P	V	A	T	V	I	Q	Q	E	M	E	I	R	Y	P	P	K	G	F	K	K	L	W	R	K	Y	L	L	S	P	E	A	Q	K	V	I	E	Y	A	Q	D	T	S	S	R	V	L	P	L	V	Q	Y	I	G	Q	F	S	S	I	I	N	W	I	A	G	G	I	K	V	F	S	D	S	R
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	V	D	Q	K	T	T	T	K	L	R	A	E	I	A	G	Q	L	V	S	L	D	L	K	F	I	V	V	M	D	D	L	D	R	L	.	.	.	.	.	.	.	.	.	.	.	E	P	S	Q	V	A	E	V	F	R	L	V	R	A	V	A	D	L	P	R	F	T	H	I	L	C	Y	D	R	Q	I	I	T
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation		.	.																	.	.																																																						.	.	.	.	.	.	.
Template Sequence		.	.	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	.	.	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	S			S													.	.			T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	S			T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																	.	.																																																						.	.	.	.	.	.	.
Template SS confidence
				208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	V	E	H	A	L	N	I	E	D	G	S	R	Y	L	Q	K	I	I	Q	L	S	F	K	L	P	R	P	E	A	F	D	L	R	N	E	F	R	Q	R	A	E	A	L	Y	Q	Q	I	N	N	Q	P	P	D	S	G	M	V	R	D	L	I	A	V	T	D	T	Y	G	A	A	L	S	T	P	R	E	I	H
Query Conservation
Alig confidence		.	.	.	.																																									.	.	.	.	.																					.	.	.	.	.
Template Conservation		.	.	.	.																																									.	.	.	.	.																					.	.	.	.	.
Template Sequence		.	.	.	.	A	T	N	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	M	F	K	L	H	L	G	T	.	.	.	.	.	T	Q	N	S	L	T	E	A	D	F	R	E	L	G	R	K	T	D	G	Y	.	.	.	.	.	S	G	A	D	I	S
Template Known Secondary structure		.	.	.	.			S		T	T	T	S							T																								T	T	.	.	.	.	.			B													T		T	T		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																									.	.	.	.	.																					.	.	.	.	.
Template SS confidence
						277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.
		322	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	N	S	L	I	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	V	R	D	A	L	M	Q
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions