Job Description P96329 Confidence 98.01% Date Thu Jan 5 12:33:17 GMT 2012 Rank 28 Aligned Residues 218 % Identity 18% Template c1iy2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus Resolution 3.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.										40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.
Query Sequence		L	D	A	A	V	E	D	V	P	E	D	R	Y	G	F	G	N	I	A	E	N	I	S	R	S	I	L	.	.	.	.	.	.	.	.	.	T	L	P	L	E	A	S	N	V	V	G	I	E	G	A	W	G	S	G	K	T	S	L	L	N	L	I	L	R	N	L	A	L	K	K	D	A	H	T	H	V	L	H	I
Query Conservation																													.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		L	T	E	A	P	K	V	T	F	K	D	V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	.	.	.	.	.	.	R	V	P	F	I	T	A
Template Known Secondary structure		B								G	G	G	S	S	S																								T	T													T	T	S	S												T	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	W	L	S	G	G	S	P	V	E	A	L	F	L	P	V	A	T	V	I	Q	Q	E	M	E	I	R	Y	P	P	K	G	F	K	K	L	W	R	K	Y	L	L	S	P	E	A	Q	K	V	I	E	Y	A	Q	D	T	S	S	R	V	L	P	L	V	Q	Y	I	G	Q	F	S	S	I	I	N	W	I	A	G
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	S	D	F	V	E	M	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		G	I	K	V	F	S	D	S	R	L	A	V	D	Q	K	T	T	T	K	L	R	A	E	I	A	G	Q	L	V	S	L	D	L	K	F	I	V	V	M	D	D	L	D	R	L	.	.	.	.	.	.	E	P	S	Q	V	A	E	V	F	R	L	V	R	A	V	A	D	L	P	R	F	T	H	I	L	C	Y	D	R
Query Conservation																																															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	G	A	A	R	V	R	D	L	F	E	T	A	.	.	K	R	H	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	D	G	F	E	K	D	T	A	I	V	V	M	A	A	T	N	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T														.	.		T	S		S							T																							T	T			T	T										S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
															231	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Q	I	I	T	H	A	V	E	H	A	L	N	I	E	D	G	S	R	Y	L	Q	K	I	.	I	Q	L	S	F	K	L	P	R	P	E	A	F	D	L	R	N	E	F	R	Q	R	A	E	A	L	Y	Q	Q	I	N	N	Q	P	P	D	S	G	M	V	R	D	L	I	A	V	T	D	T	Y	G	A	A	L	S	T
Query Conservation																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.													.																										.	.	.	.	.	.																				.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	P	D	I	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	I	L	R	I	H	A	R	G	.	.	.	.	.	.	K	P	L	A	E	D	V	D	L	A	L	L	A	K	R	T	P	G	F	.	.	.	.	.	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T	S	S						S	T	T	S	S																							T	T	.	.	.	.	.	.	S		B		T	T									T		T	T		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
													304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360						.
		317	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	R	E	I	H	Q	A	I	N	S	.	L	I	F	L	Y	P	G	M	R	D	F	V	Y	F	P	D	L
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L
Template Known Secondary structure																			T	T			S	B
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions