Job Description P10805 Confidence 99.98% Date Thu Jan 5 11:32:20 GMT 2012 Rank 1 Aligned Residues 236 % Identity 15% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		Q	L	S	S	S	E	P	C	V	V	I	L	T	E	K	E	V	E	V	S	V	.	N	N	H	A	T	F	T	L	P	K	N	Y	L	A	A	F	A	C	N	N	N	V	I	E	L	S	T	L	N	H	V	L	I	T	H	I	N	R	N	I	I	N	D	Y	L	L	F	L	N	K	N	L	T	C	V	K	P	W
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		N	L	Y	I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	Y	I	L	G	N	K	D
Template Known Secondary structure						S	S							S	S	S							T	T	T	T							T	T							T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	L	A	T	P	V	I	A	C	H	S	R	T	P	E	V	F	R	L	A	A	N	H	S	K	Q	Q	P	S	R	P	C	E	A	E	L	T	R	A	L	L	F	T	V	L	S	N	F	L	E	Q	S	R	F	I	A	L	L	M	Y	I	L	R	S	S	V	R	D	S	V	C	R	I	I	Q	S	D	I	Q
Query Conservation
Alig confidence			.	.	.	.	.	.	.																																																								.	.	.
Template Conservation			.	.	.	.	.	.	.																																																								.	.	.
Template Sequence		L	.	.	.	.	.	.	.	L	L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	.	.	.	A	M	E	K	I	S	C	L	V	K	S	D	I	T
Template Known Secondary structure			.	.	.	.	.	.	.							S	S										T	T	T	S	S																				T	T	T	S	S	S		S	S			T	T		.	.	.												T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.																																																								.	.	.
Template SS confidence
		114								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	W	N	L	R	I	V	A	S	S	L	C	L	S	P	S	L	L	K	K	K	L	K	N	E	N	T	S	Y	S	Q	I	V	T	E	C	R	M	R	Y	A	V	Q	M	L	L	M	D	N	K	N	I	T	Q	V	A	Q	L	C	G	Y	S	S	T	S	Y	F	I	S	V	F	K	A	F	Y	G	L	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T	M	N	V	A	P
Template Known Secondary structure		S												T												T	T	T																						T											T	T		S														S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		241	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	Y	L	A	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	Y	L	F	M	L
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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