Return to main results Retrieve Phyre Job Id

Job DescriptionP36879
Confidence97.26%DateThu Jan 5 11:53:55 GMT 2012
Rank134Aligned Residues127
% Identity13%Templatec3r8cB_
PDB info PDB header:transferaseChain: B: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60......... 70.........80.........90.........
Predicted Secondary structure 














.............



















Query SS confidence 




































. . . . . . . . . . . . .





























Query Sequence  FYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDL. . . . . . . . . . . . . EKDVVNAKRQLGLVPQEFNFNPFETVQQIV
Query Conservation 
  


 









 
 
      
 
 
 
   .............                        

    
Alig confidence 






















....









.............





























Template Conservation 

 
 
  







  

  
....
   
  
   
                                         
Template Sequence  VVAVDGPSGTGKSSVAKELARQL. . . . GASYLDTGAMYRIVTLWVLRAGVDLTDPAAIAAATDQVPMSVSSDPDAQTALL
Template Known Secondary structure 

SSSST....T
T

TT
TTTT




TT


Template Predicted Secondary structure 






....











Template SS confidence 















































































   1........10.........20... ......30.........40.........50.........60.........70......
 
   100.........110.........120.........130.........140.........150. ........160...
Predicted Secondary structure 




























....






Query SS confidence 



















































. . . .











Query Sequence  VNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARAL. . . . MHEPKLLILDEP
Query Conservation                       
    
          

 
   
  

 

....   
 






Alig confidence 



















































....











Template Conservation                                       
       
                      
Template Sequence  AGEDVSVPIRGNEVTGAVSAVSAVPAVRERLVRQQRELAESSGAVVVEGRDIGTVVLPDADVKIYLTA
Template Known Secondary structure  TT
TTGGGSTSTTSSSSS





TT
S
Template Predicted Secondary structure 











Template SS confidence 



































































   77..80.........90.........100.........110.........120.........130.........140....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions