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Job DescriptionP36879
Confidence96.13%DateThu Jan 5 11:53:55 GMT 2012
Rank296Aligned Residues156
% Identity18%Templatec3kx2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.. .......60.........70.........80.........90.........100....
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Query Sequence  VEAGDFYALLGPNGAGKSTTIGIIS. . . SLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAG
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Template Sequence  YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC. . . . TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK
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GGGGT
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TT

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   106...110.........120.........130.........140..... ....150.........160.........170.........180.
 
   105....110.........120.........130.........140.........150.........160... ......170.........180...
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Query Sequence  YYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEP. TAGVDIELRRSMWGFLKDLN
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Template Sequence  TSNK. . . . . . . . . . . . . . . . . . . . . . . TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR
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   182... ....190.........200.........210.........220.........230........
 
   184.....190.. .......200.........210
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Query Sequence  DKGTTIILT. THYLEEAEMLCRNIGIIQ
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Template Sequence  PDLKIIIMSATLDAEKFQRYFNDAPLLA
Template Known Secondary structure  TT
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   239240.........250.........260......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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