Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9H3
Confidence99.95%DateThu Jan 5 11:10:12 GMT 2012
Rank18Aligned Residues315
% Identity18%Templated1dfoa_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   196...200.........210.........220.........230.........240...... ...250.........260.........270..
Predicted Secondary structure 












...











Query SS confidence 


















































. . .

























Query Sequence  PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHK. . . SLTHLMMMSDVTPIYFRPTRNAYGIL
Query Conservation   
 


 


  


  
 






 

 
 
 
    

 


 




...

  

 



 



 
     
  
Alig confidence 


















































...

























Template Conservation 

         
 
     
   

  
    
 

  


 

          
        
     
          
Template Sequence  VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHI
Template Known Secondary structure  T
S


SS

TT

TTTT

GGGT
TTSS
B
SSSSB
Template Predicted Secondary structure 






























Template SS confidence 















































































   74.....80.........90.........100.........110.........120.........130.........140.........150...
 
   273......280.........290.........300.........310.........320...... ...330.........340.........350
Predicted Secondary structure 


























..
















Query SS confidence 





















































. .























Query Sequence  GGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS. . IHFDSAWVPYTNFSPIYEGKCGMS
Query Conservation 
 
    
    
  

   
 
  
   






 

  

  
 
  
   ..









  


       

Alig confidence  ........














.....

























..














........
Template Conservation  ........
 
 
          .....

       
   

  
  

   
  



 
   
     ........ 
Template Sequence  . . . . . . . . DYADLEKQAKEHKPK. . . . . MIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAG. . . . . . . . V
Template Known Secondary structure  ........


S.....
SS

S


TT

TTTT........S
Template Predicted Secondary structure  ........





.....




















........
Template SS confidence 















































































   154.....160........ .170.........180.........190.........200.........210. .
 
   351........360.........370.........380... ......390.........400.........410.........420.........
Predicted Secondary structure 

















.







Query SS confidence 
































.













































Query Sequence  GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD. VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSI
Query Conservation    

  


 













 
 


   .
       

   






 





 

  
  
 
  
    
Alig confidence 
































.













































Template Conservation          
    
  
 
 
   
 
                               

   
                
Template Sequence  YPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVA
Template Known Secondary structure  S


TTTSSSSSTT


S
SS

TTTT
SS

TTS
Template Predicted Secondary structure 



































Template SS confidence 















































































   213......220.........230.........240.........250.........260.........270.........280.........290..
 
   430.........440.........450.........460.........470.........480.........490.........500.........
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  ERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGI
Query Conservation    
  

  
                   
               
          


 

 
     
  
     

Alig confidence 





















...................................















.......
Template Conservation       
   
   
        ...................................                .......
Template Sequence  KNAKAMVEVFLERGYKVVSGGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DNHLFLVDLVDKNLTG. . . . . . .
Template Known Secondary structure  TT
GGGS
...................................SSS
GGGT

.......
Template Predicted Secondary structure 






...................................








.......
Template SS confidence 















































































   293......300.........310.... .....320.........330
 
   510.........520.........530.. .......540.........550.........560.........570.....
Predicted Secondary structure 







..............











Query SS confidence 






















. . . . . . . . . . . . . .










































Query Sequence  PASIVAKYLDEHGIVVEKTGPYN. . . . . . . . . . . . . . LLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPSLYR
Query Conservation   
  
  

   

  
      ..............

 
 


 
      
  

  
    
              
Alig confidence  ..




















..............










































Template Conservation  ..      
   

 
     
           


     
  
    
    
  
   
               
  
Template Sequence  . . KEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLD
Template Known Secondary structure  ..TT



TT
SS
TTT
S
TT

TTT
Template Predicted Secondary structure  ..




























Template SS confidence 















































































   331........340.........350.........360.........370.........380.........390.........400........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions